Check the pdb - is there some oddity at the end of cjhain A? A blank line - an unwanted END record, etc etc. Eleanor
On 14 October 2013 03:16, Jane <jing...@illinois.edu> wrote: > Hi all, > I am refining a protein structure with phenix and COOT, and COOT worked fine > for three runs. The pdb file is composed of two protein chains, two ligand > chains, and a water chain. Suddenly at the last run the pdb file opened by > COOT only has chain A but the mtz file still displays all the chains, while > the same file opened by Pymol contains all the chains. Does anyone know how > to solve the problem? > I am using Mac OS 10.6.8 system, and the COOT version is 0.7. I have tried to > uninstall and install it several times with two installation files (one from > the CCP4 website, the other from a link on phenix documentation), and it does > not help. > > Thanks! > > Jane
