Hi all, I get the GUI error “something went wrong running cprodrg” when I try to view a ligand in LIDIA - I’m guessing some incompatibility between coot and the version of cprodrg distributed with CCP4 6.4.0? I am running the latest coot nightly build (0.8-pre r4833) on Mac OS X 10.9, using CCP4 with all current updates installed. The console output is reproduced below. Thanks in advance for any help/advice!
Oliver. DEBUG:: obj is "<B><FONT COLOR=\"#FF0000\"><!--SUMMARY_BEGIN-->" DEBUG:: obj is "<html> <!-- CCP4 HTML LOGFILE -->" DEBUG:: obj is "<hr>" DEBUG:: obj is "<!--SUMMARY_END--></FONT></B>" DEBUG:: obj is "<B><FONT COLOR=\"#FF0000\"><!--SUMMARY_BEGIN-->" DEBUG:: obj is "<pre>" DEBUG:: obj is " " DEBUG:: obj is " ###############################################################" DEBUG:: obj is " ###############################################################" DEBUG:: obj is " ###############################################################" DEBUG:: obj is " ### CCP4 6.4: PRODRG version 2.5-AA0717 : ##" DEBUG:: obj is " ###############################################################" DEBUG:: obj is " User: olibclarke Run date: 24/11/2013 Run time: 22:22:25 " DEBUG:: obj is "" DEBUG:: obj is "" DEBUG:: obj is " Please reference: Collaborative Computational Project, Number 4. 1994." DEBUG:: obj is " \"The CCP4 Suite: Programs for Protein Crystallography\". Acta Cryst. D50, 760-763." DEBUG:: obj is " as well as any specific reference in the program write-up." DEBUG:: obj is "" DEBUG:: obj is "<!--SUMMARY_END--></FONT></B>" DEBUG:: obj is #<eof> (info-dialog "Something went wrong running cprodrg ") Symmetry available for this molecule (graphics-molecule-bond-type 8) (update-go-to-atom-window-on-new-mol) (write-pdb-file 8 "coot-ccp4/prodrg-tmp-68067-xyzin.pdb") :<B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN--> forrtl: severe (180): SIGBUS, bus error occurred Image PC Routine Line Source cprodrg 00000001000013FC Unknown Unknown Unknown cprodrg 00000001000011AC Unknown Unknown Unknown cprodrg 0000000100001164 Unknown Unknown Unknown :<html> <!-- CCP4 HTML LOGFILE --> :<hr> :<!--SUMMARY_END--></FONT></B> :<B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN--> :<pre> : : ############################################################### : ############################################################### : ############################################################### : ### CCP4 6.4: PRODRG version 2.5-AA0717 : ## : ############################################################### : User: olibclarke Run date: 24/11/2013 Run time: 22:22:25 : : : Please reference: Collaborative Computational Project, Number 4. 1994. : "The CCP4 Suite: Programs for Protein Crystallography". Acta Cryst. D50, 760-763. : as well as any specific reference in the program write-up. : :<!--SUMMARY_END--></FONT></B> (close-molecule 8)