On 25/11/13 03:46, Oliver Clarke wrote:
Hi all,
I get the GUI error “something went wrong running cprodrg” when I try to view a
ligand in LIDIA - I’m guessing some incompatibility between coot and the
version of cprodrg distributed with CCP4 6.4.0? I am running the latest coot
nightly build (0.8-pre r4833) on Mac OS X 10.9, using CCP4 with all current
updates installed. The console output is reproduced below. Thanks in advance
for any help/advice!
Oliver.
(info-dialog "Something went wrong running cprodrg
(write-pdb-file 8 "coot-ccp4/prodrg-tmp-68067-xyzin.pdb")
:<B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN-->
forrtl: severe (180): SIGBUS, bus error occurred
Image PC Routine Line Source
cprodrg 00000001000013FC Unknown Unknown Unknown
cprodrg 00000001000011AC Unknown Unknown Unknown
cprodrg 0000000100001164 Unknown Unknown Unknown
Hi Oliver,
To which nightly build do you refer?
This looks like cprodrg is crashing. And that, I believe, is a problem
for CCP4. You can verify this by running cprodrg on the command line.
IIRC, coot writes out the command line with which it tries to run
cprodrg. At a guess, it would be
$ cprodrg XYZIN prodrg-in.mdl XYZOUT prodrg-DRG.pdb LIBOUT
prodrg-out.cif << !
MINI NO
!
Paul.
