On 01/11/2020 01:49, A. H. Zadeh wrote:
Dear Coot Users,
I do have around 1000 difference electron density maps and need to
display them in Coot and take screenshots to make a movie out of them
at the end. But I do not intend to do this procedure, manually! So is
there any script to automatically open DED maps in Coot and then draw
simple screenshots from them and save as PNG files?
There wasn't one, but one could easily write one.
The view quaternion, zoom and rotation centre can be extracted from a
saved state file.
Paul.
########################################################################
To unsubscribe from the COOT list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1
This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list
hosted by www.jiscmail.ac.uk, terms & conditions are available at
https://www.jiscmail.ac.uk/policyandsecurity/
import coot
def index_to_mtz_file_name(idx):
return "index_" + str(idx) + ".mtz"
def index_to_img_file_name(idx):
return "index_" + str(idx) + ".png"
coot.read_pdb('model.pdb')
coot.set_rotation_centre(10, 20, 30)
coot.scale_zoom(10.00)
coot.set_view_quaternion(0.7034, 0.0922, -0.0016, 0.7048)
for i in range(100):
fn_mtz = index_to_mtz_file_name(i)
fn_img = index_to_img_file_name(i)
imol_map = coot.make_and_draw_map(fn_mtz, "FWT", "PHWT", "", 0, 0)
coot.screendump_image(fn_img)
coot.close_molecule(imol_map)
