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• [jira] [Updated] (CTAKES-181) Post Graduation Tasks Pei Chen (JIRA)
  • [jira] [Updated] (CTAKES-181) Post Graduation Tasks Pei Chen (JIRA)
• [jira] [Created] (CTAKES-181) Post Graduations Tasks Pei Chen (JIRA)
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• [jira] [Closed] (CTAKES-180) Create an ASF DOAP File for cTAKES James Joseph Masanz (JIRA)
• [jira] [Created] (CTAKES-180) Create an ASF DOAP File for cTAKES James Joseph Masanz (JIRA)
• [jira] [Created] (CTAKES-179) DrugAnnotator MedicationFrequency.Number not populated in some cases Vinod K (JIRA)
• [jira] [Created] (CTAKES-178) parsing of medication strength does not verify a number was discovered (strength value includes both the dosage and strength value in some cases) James Joseph Masanz (JIRA)
• [jira] [Reopened] (CTAKES-170) relation extractor has dependency on clinical pipeilne Dmitriy Dligach (JIRA)
• [jira] [Commented] (CTAKES-171) jdom version breaks sectionizer Pei Chen (JIRA)
  • [jira] [Commented] (CTAKES-171) jdom version breaks sectionizer Steven Bethard (JIRA)
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• [jira] [Closed] (CTAKES-157) ctakes-side-effect .classpath has extraneous entry James Joseph Masanz (JIRA)
• [jira] [Closed] (CTAKES-166) RelationExtractorAggregate.xml is missing a name James Joseph Masanz (JIRA)
• [jira] [Resolved] (CTAKES-147) java.io.FileNotFoundException: resources\org\apache\ctakes\relationextractor\models\resources\models\em_pair\model.jar James Joseph Masanz (JIRA)
• [jira] [Commented] (CTAKES-166) RelationExtractorAggregate.xml is missing a name Steven Bethard (JIRA)
  • [jira] [Commented] (CTAKES-166) RelationExtractorAggregate.xml is missing a name James Joseph Masanz (JIRA)
  • [jira] [Commented] (CTAKES-166) RelationExtractorAggregate.xml is missing a name Steven Bethard (JIRA)
  • [jira] [Commented] (CTAKES-166) RelationExtractorAggregate.xml is missing a name James Joseph Masanz (JIRA)
  • [jira] [Commented] (CTAKES-166) RelationExtractorAggregate.xml is missing a name Pei Chen (JIRA)
• [jira] [Resolved] (CTAKES-177) relation extractor should look for models on classpath Steven Bethard (JIRA)
• [jira] [Resolved] (CTAKES-140) Allow clearTK to load read-only models from classpath instead of file URL. Steven Bethard (JIRA)
• [jira] [Created] (CTAKES-177) relation extractor should look for models on classpath Steven Bethard (JIRA)
• Jenkins build is unstable: ctakes-trunk-package #75 Apache Jenkins Server
• Jenkins build is unstable: ctakes-trunk-package » Apache cTAKES Regression-test #75 Apache Jenkins Server
• [jira] [Created] (CTAKES-176) User Guide doesn't tell people how to use their UMLS user ID and password James Joseph Masanz (JIRA)
• Jenkins build is unstable: ctakes-trunk-package » Apache cTAKES Regression-test #72 Apache Jenkins Server
• [jira] [Resolved] (CTAKES-57) Type System updates for 3.x-incubating James Joseph Masanz (JIRA)
• Jenkins build became unstable: ctakes-trunk-package #71 Apache Jenkins Server
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• [jira] [Resolved] (CTAKES-173) generalize relation-extractor for relation types that are outside a single sentence Tim Miller (JIRA)
• [jira] [Resolved] (CTAKES-175) print errors in assertion module evaluation Tim Miller (JIRA)
• Build failed in Jenkins: ctakes-trunk-package #67 Apache Jenkins Server
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• [jira] [Created] (CTAKES-175) print errors in assertion module evaluation Tim Miller (JIRA)
• [jira] [Created] (CTAKES-174) use sections for coreference resolution Tim Miller (JIRA)
• Build failed in Jenkins: ctakes-trunk-compiletest #190 Apache Jenkins Server
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• [jira] [Commented] (CTAKES-173) generalize relation-extractor for relation types that are outside a single sentence Tim Miller (JIRA)
• [jira] [Created] (CTAKES-173) generalize relation-extractor for relation types that are outside a single sentence Tim Miller (JIRA)
• [jira] [Created] (CTAKES-172) relation-extractor is using StatusAnnotator and NegationAnnotator instead of AssertionAnnotator James Joseph Masanz (JIRA)
• [jira] [Created] (CTAKES-171) jdom version breaks sectionizer Tim Miller (JIRA)
• [jira] [Commented] (CTAKES-170) relation extractor has dependency on clinical pipeilne James Joseph Masanz (JIRA)
  • [jira] [Commented] (CTAKES-170) relation extractor has dependency on clinical pipeilne Tim Miller (JIRA)
  • [jira] [Commented] (CTAKES-170) relation extractor has dependency on clinical pipeilne James Joseph Masanz (JIRA)
  • [jira] [Commented] (CTAKES-170) relation extractor has dependency on clinical pipeilne Tim Miller (JIRA)
  • [jira] [Commented] (CTAKES-170) relation extractor has dependency on clinical pipeilne James Joseph Masanz (JIRA)
  • [jira] [Commented] (CTAKES-170) relation extractor has dependency on clinical pipeilne Troy Bleeker (JIRA)
  • [jira] [Commented] (CTAKES-170) relation extractor has dependency on clinical pipeilne James Joseph Masanz (JIRA)
  • [jira] [Commented] (CTAKES-170) relation extractor has dependency on clinical pipeilne Troy Bleeker (JIRA)
  • [jira] [Commented] (CTAKES-170) relation extractor has dependency on clinical pipeilne Dmitriy Dligach (JIRA)
• [jira] [Resolved] (CTAKES-170) relation extractor has dependency on clinical pipeilne Tim Miller (JIRA)
  • [jira] [Resolved] (CTAKES-170) relation extractor has dependency on clinical pipeilne Dmitriy Dligach (JIRA)
• [jira] [Created] (CTAKES-170) relation extractor has dependency on clinical pipeilne Tim Miller (JIRA)
• [jira] [Created] (CTAKES-169) SectionSegmentAnnotator.java is in core, but the sample SectionSegmentAnnotator.xml descriptor is in ctakes-clinical-pipeline Pei Chen (JIRA)
• [jira] [Created] (CTAKES-168) clean up maven/project dependencies Pei Chen (JIRA)
• [jira] [Resolved] (CTAKES-167) dictionary lookup calls identifies "to" as a named entity Tim Miller (JIRA)
• [jira] [Created] (CTAKES-167) dictionary lookup calls identifies "to" as a named entity Tim Miller (JIRA)
• [jira] [Commented] (CTAKES-165) no maven profiles for running via maven other than mvn -PrunCPE and mvn -RrunCVD which are in ctakes-clinical-pipeline Pei Chen (JIRA)
  • [jira] [Commented] (CTAKES-165) no maven profiles for running via maven other than mvn -PrunCPE and mvn -RrunCVD which are in ctakes-clinical-pipeline James Joseph Masanz (JIRA)
  • [jira] [Commented] (CTAKES-165) no maven profiles for running via maven other than mvn -PrunCPE and mvn -RrunCVD which are in ctakes-clinical-pipeline Andy McMurry (JIRA)
  • [jira] [Commented] (CTAKES-165) no maven profiles for running via maven other than mvn -PrunCPE and mvn -RrunCVD which are in ctakes-clinical-pipeline Pei Chen (JIRA)
  • [jira] [Commented] (CTAKES-165) no maven profiles for running via maven other than mvn -PrunCPE and mvn -RrunCVD which are in ctakes-clinical-pipeline Chen, Pei (JIRA)
  • [jira] [Commented] (CTAKES-165) no maven profiles for running via maven other than mvn -PrunCPE and mvn -RrunCVD which are in ctakes-clinical-pipeline James Joseph Masanz (JIRA)
• [jira] [Created] (CTAKES-166) RelationExtractorAggregate.xml is missing a name James Joseph Masanz (JIRA)
• [jira] [Created] (CTAKES-165) no maven profiles for running via maven other than mvn -PrunCPE and mvn -RrunCVD which are in ctakes-clinical-pipeline James Joseph Masanz (JIRA)
• [jira] [Resolved] (CTAKES-164) UMLS password could not be set in shell as ctakes.umlspw Sean Finan (JIRA)
• [jira] [Created] (CTAKES-164) UMLS password could not be set in shell as ctakes.umlspw Sean Finan (JIRA)
• [jira] [Commented] (CTAKES-163) testpatient_plaintext_1.txt not included in binary distribution James Joseph Masanz (JIRA)
• Build failed in Jenkins: ctakes-trunk-package #60 Apache Jenkins Server
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• Build failed in Jenkins: ctakes-trunk-package » Apache cTAKES Temporal Information Extraction #60 Apache Jenkins Server
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• Build failed in Jenkins: ctakes-trunk-compiletest #182 Apache Jenkins Server
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• [jira] [Created] (CTAKES-163) testpatient_plaintext_1.txt not included in binary distribution James Joseph Masanz (JIRA)
• [jira] [Created] (CTAKES-162) Command line scripts leave the user back one directory Troy Bleeker (JIRA)
• Jenkins build is back to normal : ctakes-trunk-package » Apache cTAKES common type system #59 Apache Jenkins Server
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• [jira] [Created] (CTAKES-161) Java 1.5+ Sean Finan (JIRA)
• [jira] [Created] (CTAKES-160) Exception Refinement Sean Finan (JIRA)
• [jira] [Created] (CTAKES-159) Increase the use of java generics in the cTakes code Sean Finan (JIRA)
• [jira] [Commented] (CTAKES-151) LVG is not thread safe for multiple instances inside of a single JVM. Pei Chen (JIRA)
• Build failed in Jenkins: ctakes-trunk-compiletest #178 Apache Jenkins Server
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• Build failed in Jenkins: ctakes-trunk-compiletest » Apache cTAKES core #178 Apache Jenkins Server
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• [jira] [Commented] (CTAKES-131) Reconcile Type System with the updated CEM templates Stephen Wu (JIRA)
  • [jira] [Commented] (CTAKES-131) Reconcile Type System with the updated CEM templates Steven Bethard (JIRA)
  • [jira] [Commented] (CTAKES-131) Reconcile Type System with the updated CEM templates Steven Bethard (JIRA)
  • [jira] [Commented] (CTAKES-131) Reconcile Type System with the updated CEM templates Stephen Wu (JIRA)
• [jira] [Created] (CTAKES-158) DateAnnotation bug when two dates directly adjacent James Joseph Masanz (JIRA)
• [jira] [Created] (CTAKES-157) ctakes-side-effect .classpath has extraneous entry James Joseph Masanz (JIRA)
• [jira] [Created] (CTAKES-156) java.io.FileNotFoundException: lookup/rxnorm_index when using DictionaryLookupAnnotator_sideEffectUMLS.xml James Joseph Masanz (JIRA)
• [jira] [Commented] (CTAKES-76) get third party dependencies into Maven Central Pei Chen (JIRA)
  • [jira] [Commented] (CTAKES-76) get third party dependencies into Maven Central Pei Chen (JIRA)
• [jira] [Created] (CTAKES-155) SimpleSegmentWithTagsAnnotator assumes all section names are 5 characters Steven Bethard (JIRA)
• [jira] [Resolved] (CTAKES-153) clean up constituency parser code Tim Miller (JIRA)
• [jira] [Created] (CTAKES-154) Add i2b2 features to assertion module Tim Miller (JIRA)
• [jira] [Created] (CTAKES-153) clean up constituency parser code Tim Miller (JIRA)
• [jira] [Updated] (CTAKES-152) ConceptLookup returns inconsistent results because it depends upon HashMap ordering Kim Ebert (JIRA)
• [jira] [Created] (CTAKES-152) ConceptLookup returns inconsistent results because it depends upon HashMap ordering Kim Ebert (JIRA)
• [jira] [Updated] (CTAKES-151) LVG is not thread safe for multiple instances inside of a single JVM. Kim Ebert (JIRA)
• [jira] [Created] (CTAKES-151) LVG is not thread safe for multiple instances inside of a single JVM. Kim Ebert (JIRA)
• [jira] [Updated] (CTAKES-150) Apostrophe parsing is not thread safe because of global variable Kim Ebert (JIRA)
• [jira] [Created] (CTAKES-150) Apostrophe parsing is not thread safe because of global variable Kim Ebert (JIRA)
• [jira] [Created] (CTAKES-149) cTAKES is not thread safe. Kim Ebert (JIRA)
• [jira] [Updated] (CTAKES-147) java.io.FileNotFoundException: resources\org\apache\ctakes\relationextractor\models\resources\models\em_pair\model.jar James Joseph Masanz (JIRA)
• [jira] [Commented] (CTAKES-147) java.io.FileNotFoundException: resources\org\apache\ctakes\relationextractor\models\resources\models\em_pair\model.jar James Joseph Masanz (JIRA)
  • [jira] [Commented] (CTAKES-147) java.io.FileNotFoundException: resources\org\apache\ctakes\relationextractor\models\resources\models\em_pair\model.jar Steven Bethard (JIRA)
• [jira] [Assigned] (CTAKES-147) java.io.FileNotFoundException: resources\org\apache\ctakes\relationextractor\models\resources\models\em_pair\model.jar James Joseph Masanz (JIRA)
• [jira] [Assigned] (CTAKES-148) java.io.FileNotFoundException: C:\cTAKES\xxxx\desc\Constituency Parser\desc\ConstituencyParserAnnotator.xml James Joseph Masanz (JIRA)
• [jira] [Commented] (CTAKES-148) java.io.FileNotFoundException: C:\cTAKES\xxxx\desc\Constituency Parser\desc\ConstituencyParserAnnotator.xml James Joseph Masanz (JIRA)
  • [jira] [Commented] (CTAKES-148) java.io.FileNotFoundException: C:\cTAKES\xxxx\desc\Constituency Parser\desc\ConstituencyParserAnnotator.xml James Joseph Masanz (JIRA)
• [jira] [Updated] (CTAKES-148) java.io.FileNotFoundException: C:\cTAKES\xxxx\desc\Constituency Parser\desc\ConstituencyParserAnnotator.xml James Joseph Masanz (JIRA)
  • [jira] [Updated] (CTAKES-148) java.io.FileNotFoundException: C:\cTAKES\xxxx\desc\Constituency Parser\desc\ConstituencyParserAnnotator.xml James Joseph Masanz (JIRA)
• [jira] [Created] (CTAKES-148) java.io.FileNotFoundException: C:\cTAKES\xxxx\desc\Constituency Parser\desc\ConstituencyParserAnnotator.xml James Joseph Masanz (JIRA)
• [jira] [Created] (CTAKES-147) java.io.FileNotFoundException: resources\org\apache\ctakes\relationextractor\models\resources\models\em_pair\model.jar James Joseph Masanz (JIRA)
• [jira] [Resolved] (CTAKES-143) dictionary lookup iterates inefficiently Tim Miller (JIRA)
• [jira] [Commented] (CTAKES-146) cTAKES doesn't identify SNOWMED codes consistently Kim Ebert (JIRA)
  • [jira] [Commented] (CTAKES-146) cTAKES doesn't identify SNOWMED codes consistently Kim Ebert (JIRA)
• [jira] [Created] (CTAKES-146) cTAKES doesn't identify SNOWMED codes consistently Kim Ebert (JIRA)
• [jira] [Commented] (CTAKES-145) inconsistent handling of upper ascii James Joseph Masanz (JIRA)
  • [jira] [Commented] (CTAKES-145) inconsistent handling of upper ascii Steven Bethard (JIRA)
  • [jira] [Commented] (CTAKES-145) inconsistent handling of upper ascii Andy McMurry (JIRA)
• [jira] [Created] (CTAKES-145) inconsistent handling of upper ascii James Joseph Masanz (JIRA)
• [jira] [Resolved] (CTAKES-144) The ctakes-distribution module should be excluded from deployment to maven central. Pei Chen (JIRA)
• [jira] [Created] (CTAKES-144) The ctakes-distribution module should be excluded from deployment to maven central. Pei Chen (JIRA)
• [jira] [Updated] (CTAKES-143) dictionary lookup iterates inefficiently Tim Miller (JIRA)
  • [jira] [Updated] (CTAKES-143) dictionary lookup iterates inefficiently Tim Miller (JIRA)
  • [jira] [Updated] (CTAKES-143) dictionary lookup iterates inefficiently Tim Miller (JIRA)
• [jira] [Created] (CTAKES-143) dictionary lookup iterates inefficiently Tim Miller (JIRA)
• [jira] [Resolved] (CTAKES-130) DictionaryLookupAnnotatorDB default config error Pei Chen (JIRA)
• [jira] [Created] (CTAKES-142) can't find lookup/snomed-like_codes_sample Side effect descriptors need relative path updates James Joseph Masanz (JIRA)
• [jira] [Resolved] (CTAKES-136) Move models and binary from the src/main/resources to SourceForge Pei Chen (JIRA)
• [jira] [Commented] (CTAKES-138) Remove 3rd party jars from our SVN Pei Chen (JIRA)
• [jira] [Updated] (CTAKES-138) Remove 3rd party jars from our SVN Pei Chen (JIRA)
• [jira] [Commented] (CTAKES-141) side effect descriptors referencing old package names - edu.mayo.bmi.uima.chunker.PhraseTypeChunkCreator James Joseph Masanz (JIRA)
• [jira] [Updated] (CTAKES-141) side effect descriptors referencing old package names - edu.mayo.bmi.uima.chunker.PhraseTypeChunkCreator James Joseph Masanz (JIRA)
• [jira] [Created] (CTAKES-141) side effect descriptors referencing old package names - edu.mayo.bmi.uima.chunker.PhraseTypeChunkCreator James Joseph Masanz (JIRA)
• [jira] [Commented] (CTAKES-140) Allow clearTK to load read-only models from classpath instead of file URL. Steven Bethard (JIRA)
  • [jira] [Commented] (CTAKES-140) Allow clearTK to load read-only models from classpath instead of file URL. Pei Chen (JIRA)
  • [jira] [Commented] (CTAKES-140) Allow clearTK to load read-only models from classpath instead of file URL. Steven Bethard (JIRA)
• [jira] [Created] (CTAKES-140) Allow clearTK to load read-only models from classpath instead of file URL. Pei Chen (JIRA)
• [jira] [Commented] (CTAKES-139) FileNotFoundException: .... SideEffectTypeSystem.xml (The system cannot find the path specified) James Joseph Masanz (JIRA)
• [jira] [Created] (CTAKES-139) FileNotFoundException: .... SideEffectTypeSystem.xml (The system cannot find the path specified) James Joseph Masanz (JIRA)
• [jira] [Updated] (CTAKES-131) Reconcile Type System with the updated CEM templates Stephen Wu (JIRA)
• [jira] [Updated] (CTAKES-132) Some Knowtator EntityMentions annotations have no spans when brought into UIMA Stephen Wu (JIRA)
• [jira] [Created] (CTAKES-138) Remove 3rd party jars from our SVN James Joseph Masanz (JIRA)
• [jira] [Resolved] (CTAKES-137) Correct LICENSE and NOTICE files James Joseph Masanz (JIRA)
• [jira] [Created] (CTAKES-137) Correct LICENSE and NOTICE files James Joseph Masanz (JIRA)
• [jira] [Resolved] (CTAKES-129) Populate the Drug NER named entity confidence attribute Sean (JIRA)
• [jira] [Commented] (CTAKES-129) Populate the Drug NER named entity confidence attribute Sean (JIRA)
• [jira] [Resolved] (CTAKES-128) Update path in the smoking status pipeline to correctly find negation annotation Sean (JIRA)
• [jira] [Created] (CTAKES-136) Move models and binary from the src/main/resources to SourceForge Pei Chen (JIRA)
• [jira] [Created] (CTAKES-135) remove older uimafit dependency once uimafit is released as part of Apache UIMA James Joseph Masanz (JIRA)
• [jira] [Resolved] (CTAKES-134) alternate sectionizer cannot find resource file Tim Miller (JIRA)
• [jira] [Created] (CTAKES-134) alternate sectionizer cannot find resource file Tim Miller (JIRA)
• [jira] [Resolved] (CTAKES-133) constituency-parser: escaped types confused for function tags Tim Miller (JIRA)
• [jira] [Created] (CTAKES-133) constituency-parser: escaped types confused for function tags Tim Miller (JIRA)
• [jira] [Updated] (CTAKES-130) DictionaryLookupAnnotatorDB default config error Karthik Sarma (JIRA)
  • [jira] [Updated] (CTAKES-130) DictionaryLookupAnnotatorDB default config error Pei Chen (JIRA)
• [jira] [Created] (CTAKES-132) Some Knowtator EntityMentions annotations have no spans when brought into UIMA Stephen Wu (JIRA)
• [jira] [Created] (CTAKES-131) Reconcile Type System with the updated CEM templates Stephen Wu (JIRA)
• [jira] [Resolved] (CTAKES-18) add XxxxEntity|EventMention types for other NEs similar to MedicationEventMention Stephen Wu (JIRA)
• [jira] [Commented] (CTAKES-130) DictionaryLookupAnnotatorDB default config error Pei Chen (JIRA)
  • [jira] [Commented] (CTAKES-130) DictionaryLookupAnnotatorDB default config error Karthik Sarma (JIRA)
• [jira] [Created] (CTAKES-130) DictionaryLookupAnnotatorDB default config error Karthik Sarma (JIRA)
• [jira] [Created] (CTAKES-129) Populate the Drug NER named entity confidence attribute Sean (JIRA)
• [jira] [Created] (CTAKES-128) Update path in the smoking status pipeline to correctly find negation annotation Sean (JIRA)
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