[
https://issues.apache.org/jira/browse/CTAKES-146?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13572557#comment-13572557
]
Kim Ebert commented on CTAKES-146:
----------------------------------
Here is an alternate patch to avoid cloning the object as often.
=== modified file
'src/edu/mayo/bmi/lookup/algorithms/FirstTokenPermutationImpl.java'
--- src/edu/mayo/bmi/lookup/algorithms/FirstTokenPermutationImpl.java
2012-11-28 01:56:50 +0000
+++ src/edu/mayo/bmi/lookup/algorithms/FirstTokenPermutationImpl.java
2013-02-06 16:39:37 +0000
@@ -294,14 +294,16 @@
Iterator mdhIterator = mdhSet.iterator();
while (mdhIterator.hasNext())
{
- MetaDataHit mdh = (MetaDataHit) mdhIterator.next();
+ MetaDataHit mdh = (MetaDataHit) mdhIterator.next();
+
+ List permutationSorted = (List)
((ArrayList)permutation).clone();
// figure out start and end offsets
- Collections.sort(permutation);
+ Collections.sort(permutationSorted);
int startOffset;
- if (permutation.size() > 0)
+ if (permutationSorted.size() > 0)
{
- int firstIdx = ((Integer)
permutation.get(0)).intValue();
+ int firstIdx = ((Integer)
permutationSorted.get(0)).intValue();
if (firstIdx <= firstTokenIndex.intValue())
{
firstIdx--;
@@ -322,9 +324,9 @@
}
int endOffset;
- if (permutation.size() > 0)
+ if (permutationSorted.size() > 0)
{
- int lastIdx = ((Integer)
permutation.get(permutation.size() - 1)).intValue();
+ int lastIdx = ((Integer)
permutationSorted.get(permutationSorted.size() - 1)).intValue();
if (lastIdx <= firstTokenIndex.intValue())
{
lastIdx--;
> cTAKES doesn't identify SNOWMED codes consistently
> --------------------------------------------------
>
> Key: CTAKES-146
> URL: https://issues.apache.org/jira/browse/CTAKES-146
> Project: cTAKES
> Issue Type: Bug
> Components: ctakes-dictionary-lookup
> Affects Versions: 2.6-incubating, 3.0-incubating, future enhancement,
> 3.1-incubating
> Reporter: Kim Ebert
>
> When running an identical document through in a single run through cTAKES,
> different SNOWMED codes are identified for the same document.
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