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https://issues.apache.org/jira/browse/CTAKES-100?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
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Chen Lin updated CTAKES-100:
----------------------------
Affects Version/s: (was: 3.0-incubating)
3.1-incubating
> CAS does not contain any DocumentID
> -----------------------------------
>
> Key: CTAKES-100
> URL: https://issues.apache.org/jira/browse/CTAKES-100
> Project: cTAKES
> Issue Type: Bug
> Components: ctakes-temporal
> Affects Versions: 3.1-incubating
> Environment: Windows 7, 64 bit
> Reporter: Chen Lin
> Priority: Minor
> Labels: test
> Original Estimate: 168h
> Remaining Estimate: 168h
>
> When I run the EvaluationOfEventSpan.java of ctakes-temporal, the DocumentID
> in the gold standard training document (knowtator format) cannot be fetched.
> Error messages:
> Exception in thread "main"
> org.apache.uima.analysis_engine.AnalysisEngineProcessException: Annotator
> processing failed.
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:391)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.processAndOutputNewCASes(PrimitiveAnalysisEngine_impl.java:296)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator.processUntilNextOutputCas(ASB_impl.java:567)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator.<init>(ASB_impl.java:409)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.process(ASB_impl.java:342)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.processAndOutputNewCASes(AggregateAnalysisEngine_impl.java:267)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator.processUntilNextOutputCas(ASB_impl.java:567)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator.<init>(ASB_impl.java:409)
> at
> org.apache.uima.analysis_engine.asb.impl.ASB_impl.process(ASB_impl.java:342)
> at
> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.processAndOutputNewCASes(AggregateAnalysisEngine_impl.java:267)
> at
> org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.process(AnalysisEngineImplBase.java:267)
> at
> org.uimafit.pipeline.SimplePipeline.runPipeline(SimplePipeline.java:223)
> at
> org.uimafit.pipeline.SimplePipeline.runPipeline(SimplePipeline.java:143)
> at
> org.apache.ctakes.temporal.eval.EvaluationOfAnnotationSpans_ImplBase.train(EvaluationOfAnnotationSpans_ImplBase.java:88)
> at
> org.cleartk.eval.Evaluation_ImplBase.crossValidation(Evaluation_ImplBase.java:106)
> at
> org.apache.ctakes.temporal.eval.Evaluation_ImplBase.crossValidation(Evaluation_ImplBase.java:111)
> at
> org.apache.ctakes.temporal.eval.EvaluationOfEventSpans.main(EvaluationOfEventSpans.java:52)
> Caused by: java.lang.IllegalArgumentException: CAS does not contain any
> [org.apache.ctakes.typesystem.type.structured.DocumentID]
> at org.uimafit.util.CasUtil.selectSingle(CasUtil.java:764)
> at org.uimafit.util.JCasUtil.selectSingle(JCasUtil.java:515)
> at
> org.apache.ctakes.core.ae.SHARPKnowtatorXMLReader.getJCasURIString(SHARPKnowtatorXMLReader.java:76)
> at
> org.apache.ctakes.core.ae.SHARPKnowtatorXMLReader.process(SHARPKnowtatorXMLReader.java:102)
> at
> org.apache.uima.analysis_component.JCasAnnotator_ImplBase.process(JCasAnnotator_ImplBase.java:48)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:375)
> ... 16 more
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