No, it will be a while before this version is up on a live site. Lincoln
On Wed, Aug 4, 2010 at 3:35 PM, Thomas Down <[email protected]> wrote: > That's great Lincoln. > > I don't suppose there's an updated server up somewhere that I could test > against? > > Thanks, > > Thomas. > > > On Wed, Aug 4, 2010 at 8:26 PM, Lincoln Stein <[email protected]>wrote: > >> Thanks for the pointers. I've added CORS capabilities to the GBrowse DAS >> server. >> >> Lincoln >> >> On Wed, Aug 4, 2010 at 11:03 AM, Leyla Garcia <[email protected]> wrote: >> >> > Thanks Andy and Jonathan, >> > >> > The CORS header is already in MyDAS and it will be available for the >> next >> > release, which will be soon :) >> > I will check the specification about Access-Control-Expose-Headers >> > >> > Jonathan, I am checking the response headers with an add-on in Firefox. >> I >> > tried the first URL in the dasregistry link you send me, i.e. >> > http://cathdb.info:9000/das/cath_pdb/features?segment=5pti >> > but I do not see the Access-Control-Allow-Origin header there. So I am >> not >> > sure what I missing... >> > >> > Leyla >> > >> > >> > >> > On 04/08/2010 15:54, Jonathan Warren wrote: >> > >> >> resp.setHeader("Access-Control-Allow-Origin", "*"); >> >> >> >> On 4 Aug 2010, at 15:51, Jonathan Warren wrote: >> >> >> >> This url list 150 das sources that implement cors - see traffic light >> on >> >>> the end: >> >>> >> >>> >> >>> >> http://www.dasregistry.org/listServices.jsp?organism=any&CSName=any&CSTypes=any&capabilities=cors&labels=any&spec=any&cmd=find >> < >> >>> >> http://www.dasregistry.org/listServices.jsp?organism=any&CSName=any&CSTypes=any&capabilities=cors&labels=any&spec=any&cmd=find >> >>> > >> >>> >> >>> >> >>> You can check the headers responses for any of their valid responses. >> >>> >> >>> If you want some java code that adds this functionality to MyDAS I >> can >> >>> send it to you... >> >>> >> >>> On 4 Aug 2010, at 15:03, Leyla Garcia wrote: >> >>> >> >>> About CORS, >> >>>> >> >>>> >If you run your own DAS servers and >> >>>> >don't list them in the registry, you'll need to check for CORS >> >>>> compatibility >> >>>> >yourself. The latest versions of Proserver and Dazzle should both >> be >> >>>> okay. >> >>>> >> >>>> If I am not mistaken, Proserver already implements CORS headers? >> >>>> Andy, could you please send me a link of a Proserver server that >> >>>> implements this? >> >>>> >> >>>> Thanks, >> >>>> >> >>>> Leyla >> >>>> >> >>>> On 03/08/2010 21:52, Jonathan Warren wrote: >> >>>> >> >>>>> This is very cool - I had a look the other day. Was wondering why >> some >> >>>>> sources could be attached and some can't.... >> >>>>> Best browser experience yet by far I'd say. >> >>>>> >> >>>>> No problems about adding CORS support - for the record I'm very >> happy >> >>>>> to implement new capabilities testing and other suggestions to the >> registry >> >>>>> from anyone who cares to drop me a line. Especially if it's going to >> enhance >> >>>>> and promote the use of the registry :) >> >>>>> >> >>>>> >> >>>>> On 3 Aug 2010, at 20:41, Thomas Down wrote: >> >>>>> >> >>>>> As some of you already know, I've been experimenting recently with >> a >> >>>>>> web-based DAS client for genomic data. It's still in >> >>>>>> a unashamedly prototypical state (in particular, some of the popups >> >>>>>> and >> >>>>>> configuration stuff is outright clunky, and we know it!), but we're >> >>>>>> starting >> >>>>>> to find it quite useful, and would be interested to receive more >> >>>>>> feedback. >> >>>>>> So if you're curious, you can try it here: >> >>>>>> >> >>>>>> http://www.biodalliance.org/human/ncbi36/ >> >>>>>> >> >>>>>> It's a fully-fledged DAS/1.53 client (with a few bits of DAS/1.6, >> and >> >>>>>> hopefully rather more coming soon), but has one major caveat: since >> >>>>>> it's >> >>>>>> pure Javascript code running in your web browser, there are >> >>>>>> limitations to >> >>>>>> which servers it can connect to. Specifically, it will only work >> with >> >>>>>> DAS >> >>>>>> servers that implement the W3C cross-origin resource sharing model >> >>>>>> (which >> >>>>>> has been discussed on this list before, but drop me a line if >> you've >> >>>>>> got any >> >>>>>> questions). What does this mean in practice? If you're adding >> >>>>>> datasources >> >>>>>> from the registry, things are simple because Dalliance will only >> allow >> >>>>>> you >> >>>>>> to add CORS-enabled sources (a huge thanks to Jonathan Warren for >> >>>>>> adding >> >>>>>> some support for this in the registry). If you run your own DAS >> >>>>>> servers and >> >>>>>> don't list them in the registry, you'll need to check for CORS >> >>>>>> compatibility >> >>>>>> yourself. The latest versions of Proserver and Dazzle should both >> be >> >>>>>> okay. >> >>>>>> >> >>>>>> All comments, suggestions, and bug reports are welcome! >> >>>>>> >> >>>>>> Thomas Down. >> >>>>>> _______________________________________________ >> >>>>>> DAS mailing list >> >>>>>> [email protected] >> >>>>>> http://lists.open-bio.org/mailman/listinfo/das >> >>>>>> >> >>>>> >> >>>>> Jonathan Warren >> >>>>> Senior Developer and DAS coordinator >> >>>>> blog: http://biodasman.wordpress.com/ >> >>>>> [email protected] >> >>>>> Ext: 2314 >> >>>>> Telephone: 01223 492314 >> >>>>> >> >>>>> >> >>>>> >> >>>>> >> >>>>> >> >>>>> >> >>>>> >> >>>>> >> >>>>> >> >>>>> >> >>>> _______________________________________________ >> >>>> DAS mailing list >> >>>> [email protected] >> >>>> http://lists.open-bio.org/mailman/listinfo/das >> >>>> >> >>> >> >>> Jonathan Warren >> >>> Senior Developer and DAS coordinator >> >>> blog: http://biodasman.wordpress.com/ >> >>> [email protected] >> >>> Ext: 2314 >> >>> Telephone: 01223 492314 >> >>> >> >>> >> >>> >> >>> >> >>> >> >>> >> >>> >> >>> >> >> Jonathan Warren >> >> Senior Developer and DAS coordinator >> >> blog: http://biodasman.wordpress.com/ >> >> [email protected] <mailto:[email protected]> >> >> >> >> Ext: 2314 >> >> Telephone: 01223 492314 >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> -- The Wellcome Trust Sanger Institute is operated by Genome Research >> >> Limited, a charity registered in England with number 1021457 and a >> company >> >> registered in England with number 2742969, whose registered office is >> 215 >> >> Euston Road, London, NW1 2BE. >> >> >> > >> > _______________________________________________ >> > DAS mailing list >> > [email protected] >> > http://lists.open-bio.org/mailman/listinfo/das >> > >> >> >> >> -- >> Lincoln D. Stein >> Director, Informatics and Biocomputing Platform >> Ontario Institute for Cancer Research >> 101 College St., Suite 800 >> Toronto, ON, Canada M5G0A3 >> 416 673-8514 >> Assistant: Renata Musa <[email protected]> >> _______________________________________________ >> DAS mailing list >> [email protected] >> http://lists.open-bio.org/mailman/listinfo/das >> > > -- Lincoln D. Stein Director, Informatics and Biocomputing Platform Ontario Institute for Cancer Research 101 College St., Suite 800 Toronto, ON, Canada M5G0A3 416 673-8514 Assistant: Renata Musa <[email protected]> _______________________________________________ DAS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/das
