Hi Lincoln
I noticed for the GBrowse clients that I've seen online that the
option of a user adding a DAS track is not available, only the GBrowse
provider can do so in the config?
For the new GBrowse is there a plan/chance that it will use the
registry and/or allow people to specify a url directly?
There is some registry code available now that is written purely in
javascript that would make interacting with the registry very easy to
add.
On 4 Aug 2010, at 21:14, Lincoln Stein wrote:
No, it will be a while before this version is up on a live site.
Lincoln
On Wed, Aug 4, 2010 at 3:35 PM, Thomas Down
<[email protected]> wrote:
That's great Lincoln.
I don't suppose there's an updated server up somewhere that I could
test
against?
Thanks,
Thomas.
On Wed, Aug 4, 2010 at 8:26 PM, Lincoln Stein <[email protected]
>wrote:
Thanks for the pointers. I've added CORS capabilities to the
GBrowse DAS
server.
Lincoln
On Wed, Aug 4, 2010 at 11:03 AM, Leyla Garcia <[email protected]>
wrote:
Thanks Andy and Jonathan,
The CORS header is already in MyDAS and it will be available for
the
next
release, which will be soon :)
I will check the specification about Access-Control-Expose-Headers
Jonathan, I am checking the response headers with an add-on in
Firefox.
I
tried the first URL in the dasregistry link you send me, i.e.
http://cathdb.info:9000/das/cath_pdb/features?segment=5pti
but I do not see the Access-Control-Allow-Origin header there. So
I am
not
sure what I missing...
Leyla
On 04/08/2010 15:54, Jonathan Warren wrote:
resp.setHeader("Access-Control-Allow-Origin", "*");
On 4 Aug 2010, at 15:51, Jonathan Warren wrote:
This url list 150 das sources that implement cors - see traffic
light
on
the end:
http://www.dasregistry.org/listServices.jsp?organism=any&CSName=any&CSTypes=any&capabilities=cors&labels=any&spec=any&cmd=find
<
http://www.dasregistry.org/listServices.jsp?organism=any&CSName=any&CSTypes=any&capabilities=cors&labels=any&spec=any&cmd=find
You can check the headers responses for any of their valid
responses.
If you want some java code that adds this functionality to
MyDAS I
can
send it to you...
On 4 Aug 2010, at 15:03, Leyla Garcia wrote:
About CORS,
If you run your own DAS servers and
don't list them in the registry, you'll need to check for CORS
compatibility
yourself. The latest versions of Proserver and Dazzle should
both
be
okay.
If I am not mistaken, Proserver already implements CORS headers?
Andy, could you please send me a link of a Proserver server that
implements this?
Thanks,
Leyla
On 03/08/2010 21:52, Jonathan Warren wrote:
This is very cool - I had a look the other day. Was wondering
why
some
sources could be attached and some can't....
Best browser experience yet by far I'd say.
No problems about adding CORS support - for the record I'm very
happy
to implement new capabilities testing and other suggestions
to the
registry
from anyone who cares to drop me a line. Especially if it's
going to
enhance
and promote the use of the registry :)
On 3 Aug 2010, at 20:41, Thomas Down wrote:
As some of you already know, I've been experimenting recently
with
a
web-based DAS client for genomic data. It's still in
a unashamedly prototypical state (in particular, some of the
popups
and
configuration stuff is outright clunky, and we know it!),
but we're
starting
to find it quite useful, and would be interested to receive
more
feedback.
So if you're curious, you can try it here:
http://www.biodalliance.org/human/ncbi36/
It's a fully-fledged DAS/1.53 client (with a few bits of DAS/
1.6,
and
hopefully rather more coming soon), but has one major
caveat: since
it's
pure Javascript code running in your web browser, there are
limitations to
which servers it can connect to. Specifically, it will only
work
with
DAS
servers that implement the W3C cross-origin resource sharing
model
(which
has been discussed on this list before, but drop me a line if
you've
got any
questions). What does this mean in practice? If you're
adding
datasources
from the registry, things are simple because Dalliance will
only
allow
you
to add CORS-enabled sources (a huge thanks to Jonathan
Warren for
adding
some support for this in the registry). If you run your own
DAS
servers and
don't list them in the registry, you'll need to check for CORS
compatibility
yourself. The latest versions of Proserver and Dazzle
should both
be
okay.
All comments, suggestions, and bug reports are welcome!
Thomas Down.
_______________________________________________
DAS mailing list
[email protected]
http://lists.open-bio.org/mailman/listinfo/das
Jonathan Warren
Senior Developer and DAS coordinator
blog: http://biodasman.wordpress.com/
[email protected]
Ext: 2314
Telephone: 01223 492314
_______________________________________________
DAS mailing list
[email protected]
http://lists.open-bio.org/mailman/listinfo/das
Jonathan Warren
Senior Developer and DAS coordinator
blog: http://biodasman.wordpress.com/
[email protected]
Ext: 2314
Telephone: 01223 492314
Jonathan Warren
Senior Developer and DAS coordinator
blog: http://biodasman.wordpress.com/
[email protected] <mailto:[email protected]>
Ext: 2314
Telephone: 01223 492314
-- The Wellcome Trust Sanger Institute is operated by Genome
Research
Limited, a charity registered in England with number 1021457 and a
company
registered in England with number 2742969, whose registered
office is
215
Euston Road, London, NW1 2BE.
_______________________________________________
DAS mailing list
[email protected]
http://lists.open-bio.org/mailman/listinfo/das
--
Lincoln D. Stein
Director, Informatics and Biocomputing Platform
Ontario Institute for Cancer Research
101 College St., Suite 800
Toronto, ON, Canada M5G0A3
416 673-8514
Assistant: Renata Musa <[email protected]>
_______________________________________________
DAS mailing list
[email protected]
http://lists.open-bio.org/mailman/listinfo/das
--
Lincoln D. Stein
Director, Informatics and Biocomputing Platform
Ontario Institute for Cancer Research
101 College St., Suite 800
Toronto, ON, Canada M5G0A3
416 673-8514
Assistant: Renata Musa <[email protected]>
_______________________________________________
DAS mailing list
[email protected]
http://lists.open-bio.org/mailman/listinfo/das
Jonathan Warren
Senior Developer and DAS coordinator
blog: http://biodasman.wordpress.com/
[email protected]
Ext: 2314
Telephone: 01223 492314
--
The Wellcome Trust Sanger Institute is operated by Genome Research
Limited, a charity registered in England with number 1021457 and a
company registered in England with number 2742969, whose registered
office is 215 Euston Road, London, NW1 2BE.
_______________________________________________
DAS mailing list
[email protected]
http://lists.open-bio.org/mailman/listinfo/das
