Running extractions now with clean install. My mistake, incorrect command
before didn't actually kick off the extractions. :)
N
On Wed, Sep 24, 2014 at 12:24 PM, Blotto <blo...@gmail.com> wrote:
> Ah, yea my oversight. I now reran with the clean-install-run script, and
> it now shows success, but it doesn't seem to do any extraction it finishes
> in only a few minutes. The only thing that stands out to me is "[WARNING]
> Not mainClass or valid launcher found/define" near the end of the summary.
>
>
> I do see many of warnings as such:
>
> [WARNING]
>
> [WARNING]
> /mnt/frameworks/extraction-framework/core/src/main/scala/org/dbpedia/extraction/mappings/wikidata/WikidataDescriptionExtractor.scala:40:
> warning: reflective access of structural type member method ontology should
> be enabled
>
> [WARNING] by making the implicit value scala.language.reflectiveCalls
> visible.
>
> [WARNING] case Some(dbpedia_lang) => quads += new
> Quad(dbpedia_lang, DBpediaDatasets.WikidataDescription, subjectUri,
> aliasProperty,description, page.wikiPage.sourceUri,
> context.ontology.datatypes("rdf:langString"))
>
> [WARNING]
>
>
>
> Heres the summary of the process :
>
>
> [INFO]
> ------------------------------------------------------------------------
>
> [INFO] Reactor Summary:
>
> [INFO]
>
> [INFO] Parent POM of the DBpedia framework ............... SUCCESS [1.215s]
>
> [INFO] DBpedia Core Libraries ............................ SUCCESS
> [1:33.725s]
>
> [INFO] DBpedia Server .................................... SUCCESS
> [23.359s]
>
> [INFO] DBpedia Dump Extraction ........................... SUCCESS
> [12.584s]
>
> [INFO] DBpedia Scripts ................................... SUCCESS
> [17.912s]
>
> [INFO] Live extraction ................................... SUCCESS
> [20.547s]
>
> [INFO] Wiktionary Dump ................................... SUCCESS
> [22.118s]
>
> [INFO]
> ------------------------------------------------------------------------
>
> [INFO] BUILD SUCCESS
>
> [INFO]
> ------------------------------------------------------------------------
>
> [INFO] Total time: 3:11.751s
>
> [INFO] Finished at: Wed Sep 24 19:14:49 UTC 2014
>
> [INFO] Final Memory: 47M/930M
>
> [INFO]
> ------------------------------------------------------------------------
>
> [INFO] Scanning for projects...
>
> [INFO]
>
>
> [INFO]
> ------------------------------------------------------------------------
>
> [INFO] Building DBpedia Dump Extraction 4.0-SNAPSHOT
>
> [INFO]
> ------------------------------------------------------------------------
>
> [INFO]
>
> [INFO] >>> scala-maven-plugin:3.1.6:run (default-cli) @ dump >>>
>
> [INFO]
>
> [INFO] --- maven-enforcer-plugin:1.3.1:enforce (default) @ dump ---
>
> 2.565: [GC 122880K->12475K(470528K), 0.0155540 secs]
>
> [INFO]
>
> [INFO] --- maven-resources-plugin:2.3:resources (default-resources) @ dump
> ---
>
> [INFO] Using 'UTF-8' encoding to copy filtered resources.
>
> [INFO] Copying 0 resource
>
> [INFO]
>
> [INFO] --- scala-maven-plugin:3.1.6:compile (process-resources) @ dump ---
>
> [INFO] Nothing to compile - all classes are up to date
>
> [INFO]
>
> [INFO] --- maven-compiler-plugin:3.1:compile (default-compile) @ dump ---
>
> [INFO] No sources to compile
>
> [INFO]
>
> [INFO] --- scala-maven-plugin:3.1.6:compile (compile) @ dump ---
>
> [INFO] Nothing to compile - all classes are up to date
>
> [INFO]
>
> [INFO] --- maven-resources-plugin:2.3:testResources
> (default-testResources) @ dump ---
>
> [INFO] Using 'UTF-8' encoding to copy filtered resources.
>
> [INFO] Copying 0 resource
>
> [INFO]
>
> [INFO] --- maven-compiler-plugin:3.1:testCompile (default-testCompile) @
> dump ---
>
> [INFO] No sources to compile
>
> [INFO]
>
> [INFO] --- scala-maven-plugin:3.1.6:testCompile (test-compile) @ dump ---
>
> [INFO] No sources to compile
>
> [INFO]
>
> [INFO] <<< scala-maven-plugin:3.1.6:run (default-cli) @ dump <<<
>
> [INFO]
>
> [INFO] --- scala-maven-plugin:3.1.6:run (default-cli) @ dump ---
>
> [WARNING] Not mainClass or valid launcher found/define
>
> [INFO]
> ------------------------------------------------------------------------
>
> [INFO] BUILD SUCCESS
>
> [INFO]
> ------------------------------------------------------------------------
>
> [INFO] Total time: 2.330s
>
> [INFO] Finished at: Wed Sep 24 19:14:53 UTC 2014
>
> 3.893: [GC 135355K->11062K(470528K), 0.0149900 secs]
>
> 3.908: [Full GC 11062K->10860K(470528K), 0.1144960 secs]
>
> [INFO] Final Memory: 12M/459M
>
> [INFO]
> ------------------------------------------------------------------------
>
>
>
>
>
> On Wed, Sep 24, 2014 at 12:12 AM, Dimitris Kontokostas <jimk...@gmail.com>
> wrote:
>
>> just to make sure in order to investigate further
>>
>> did you run
>> $../clean-install-run extraction ...
>> before you try again
>>
>> or did you just run
>> $../run extraction ...
>>
>> If it;s the latter, changes in core did not compile when you run from the
>> dump module
>>
>> On Wed, Sep 24, 2014 at 7:53 AM, Blotto <blo...@gmail.com> wrote:
>>
>>> Thanks Dimitris, Jona! I’ve pulled latest and re-generated settings.
>>> Extraction still fails in the same place.
>>>
>>> "Caused by: java.util.NoSuchElementException: key not found: 2600"
>>>
>>> After generating settings , is there any additional step to do prior to
>>> running extractions?
>>>
>>> Cheers,
>>>
>>> Nick
>>>
>>> On Tue, Sep 23, 2014 at 6:31 AM, Jona Christopher Sahnwaldt <
>>> j...@sahnwaldt.de> wrote:
>>>
>>>> P.S.: By the way, the "Queen Isabel II Statue" has nothing to do with
>>>> this error. That's just a warning that is printed because a redirect
>>>> page cannot be parsed correctly. It just happens to be printed just
>>>> before the error occurs. ;-)
>>>>
>>>> On 23 September 2014 15:25, Jona Christopher Sahnwaldt <j...@sahnwaldt.de>
>>>> wrote:
>>>> > Hi all,
>>>> >
>>>> > @Nick: could you check out the latest code on the master branch,
>>>> > re-generate the settings as Dimitris suggested and try again?
>>>> >
>>>> > We should also re-generate the settings and commit them on github, but
>>>> > there was a bit more to do. The problem was caused by the new 'Topic'
>>>> > namespace that was added on enwiki in late July 2014 [1]. It has
>>>> > namespace number 2600 [2], but our namespace map only went up to 1999
>>>> > [3]. That's why Nick got the error message "key not found: 2600".
>>>> >
>>>> > Solution: extend the namespace map in Namespace.scala [3] to 2998. I
>>>> > just commited that change [4].
>>>> >
>>>> > We could also improve the error message in WikipediaDumpParser.java
>>>> > [5] by using get() instead of apply(), but I don't think that's
>>>> > important, and maybe dealing with Options in Java would be awkward. I
>>>> > don't know.
>>>> >
>>>> > By the way, the Topic namespace doesn't have a talk namespace, so it
>>>> > might seem that we also have to change the automatic adding of talk
>>>> > namespaces in Namespace.scala [6], but it doesn't matter - we don't
>>>> > really care about the namespaces above 400 anyway. We only use dummy
>>>> > namespaces like "Namespace 2600".
>>>> >
>>>> > Cheers,
>>>> > JC
>>>> >
>>>> > [1]
>>>> https://www.mediawiki.org/wiki/Flow/Rollout#1.24wmf14.2C_deployed_to_enwiki_on_2014-07-24
>>>> > [2] https://en.wikipedia.org/wiki/Wikipedia:Namespace
>>>> > [3]
>>>> https://github.com/dbpedia/extraction-framework/blob/master/core/src/main/scala/org/dbpedia/extraction/wikiparser/Namespace.scala#L70
>>>> > [4]
>>>> https://github.com/dbpedia/extraction-framework/commit/fdad42edb0ab3e854e410129e226b4e2bf627517
>>>> > [5]
>>>> https://github.com/dbpedia/extraction-framework/blob/master/core/src/main/java/org/dbpedia/extraction/sources/WikipediaDumpParser.java#L219
>>>> > [6]
>>>> https://github.com/dbpedia/extraction-framework/blob/master/core/src/main/scala/org/dbpedia/extraction/wikiparser/Namespace.scala#L47
>>>> >
>>>> > On Sep 23, 2014 7:58 AM, "Dimitris Kontokostas" <jimk...@gmail.com>
>>>> wrote:
>>>> >>
>>>> >> Hi Nick,
>>>> >>
>>>> >> Can you try to re-generate the settings [1] and give it another go?
>>>> >> This should be the problem but let's wait for your feedback.
>>>> >>
>>>> >> Cheers,
>>>> >> Dimitris
>>>> >>
>>>> >> [1]
>>>> https://github.com/dbpedia/extraction-framework/wiki/Extraction-Instructions#generate-settings
>>>> >>
>>>> >> On Mon, Sep 22, 2014 at 7:54 PM, Blotto <blo...@gmail.com> wrote:
>>>> >>>
>>>> >>> Hi Alexandru.
>>>> >>>
>>>> >>> This happens on any of the extractors I use for example..
>>>> >>>
>>>> >>> ../run extraction extraction.default.properties
>>>> >>> ../run extraction extraction.topical.properties
>>>> >>> ../run extraction extraction.abstracts.properties
>>>> >>>
>>>> >>> I've tried with the -X options as well, but get mostly verbose
>>>> [INFO] log entries.
>>>> >>>
>>>> >>> Cheers,
>>>> >>> Nick
>>>> >>>
>>>> >>> On Sep 22, 2014, at 9:50 AM, Alexandru Todor <
>>>> to...@inf.fu-berlin.de> wrote:
>>>> >>>
>>>> >>> Hi Nick,
>>>> >>>
>>>> >>> Your error log is to short to deduce the necessary info out of it.
>>>> >>> Are you trying to run the abstract extraction, which extractors are
>>>> you using ?
>>>> >>>
>>>> >>> Cheers,
>>>> >>> Alexandru
>>>> >>>
>>>> >>>
>>>> >>> On 09/22/2014 06:40 PM, Blotto wrote:
>>>> >>>
>>>> >>> Hi all,
>>>> >>>
>>>> >>> I've exhausted my own troubleshooting on this issue below, and hope
>>>> someone can point me in the right direction for next steps. This is the
>>>> first time I am trying to do the extractions locally and have followed all
>>>> directions I can find. I have tried the latest code from the master branch
>>>> on the extraction-framework as well as the DBpedia Release 3.9 to no
>>>> avail. My next try is an older version of the wikipedia dumps ( I have
>>>> used the August and September 2014 dumps to date).
>>>> >>>
>>>> >>> After about 12 -13 hours of running an extraction I always get a
>>>> "NoSuchElementException" failure at "Queen Isabel II Statue". Querying my
>>>> local wikipedia db "select * from page where page_title like
>>>> "Queen_Isabel_II_Statue_(Manila)" and page_namespace =0" does return a
>>>> record.
>>>> >>>
>>>> >>>
>>>> >>> Thanks in advance,
>>>> >>> Nick
>>>> >>>
>>>> >>>
>>>> >>> found by dbpedia: [title=Queen Isabel II Statue,
>>>> Manila;ns=0/Main/;language:wiki=en,locale=en].
>>>> >>>
>>>> >>> found by wikipedia: [title=Queen Isabel II Statue
>>>> (Manila);ns=0/Main/;language:wiki=en,locale=en]
>>>> >>>
>>>> >>> java.lang.reflect.InvocationTargetException
>>>> >>>
>>>> >>> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native
>>>> Method)
>>>> >>>
>>>> >>> at
>>>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
>>>> >>>
>>>> >>> at
>>>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
>>>> >>>
>>>> >>> at java.lang.reflect.Method.invoke(Method.java:606)
>>>> >>>
>>>> >>> at
>>>> org_scala_tools_maven_executions.MainHelper.runMain(MainHelper.java:161)
>>>> >>>
>>>> >>> at
>>>> org_scala_tools_maven_executions.MainWithArgsInFile.main(MainWithArgsInFile.java:26)
>>>> >>>
>>>> >>> Caused by: java.util.NoSuchElementException: key not found: 2600
>>>> >>>
>>>> >>> at scala.collection.MapLike$class.default(MapLike.scala:228)
>>>> >>>
>>>> >>> at scala.collection.AbstractMap.default(Map.scala:58)
>>>> >>>
>>>> >>> at scala.collection.MapLike$class.apply(MapLike.scala:141)
>>>> >>>
>>>> >>> at scala.collection.AbstractMap.apply(Map.scala:58)
>>>> >>>
>>>> >>> at
>>>> org.dbpedia.extraction.sources.WikipediaDumpParser.readPage(WikipediaDumpParser.java:219)
>>>> >>>
>>>> >>> at
>>>> org.dbpedia.extraction.sources.WikipediaDumpParser.readPages(WikipediaDumpParser.java:187)
>>>> >>>
>>>> >>> at
>>>> org.dbpedia.extraction.sources.WikipediaDumpParser.readDump(WikipediaDumpParser.java:145)
>>>> >>>
>>>> >>> at
>>>> org.dbpedia.extraction.sources.WikipediaDumpParser.run(WikipediaDumpParser.java:116)
>>>> >>>
>>>> >>> at
>>>> org.dbpedia.extraction.sources.XMLReaderSource.foreach(XMLSource.scala:65)
>>>> >>>
>>>> >>> at
>>>> scala.collection.TraversableLike$class.flatMap(TraversableLike.scala:251)
>>>> >>>
>>>> >>> at
>>>> org.dbpedia.extraction.sources.XMLReaderSource.flatMap(XMLSource.scala:61)
>>>> >>>
>>>> >>> at
>>>> org.dbpedia.extraction.mappings.Redirects$.loadFromSource(Redirects.scala:165)
>>>> >>>
>>>> >>> at
>>>> org.dbpedia.extraction.mappings.Redirects$.load(Redirects.scala:116)
>>>> >>>
>>>> >>> at
>>>> org.dbpedia.extraction.dump.extract.ConfigLoader$$anon$1.<init>(ConfigLoader.scala:97)
>>>> >>>
>>>> >>> at org.dbpedia.extraction.dump.extract.ConfigLoader.org
>>>> $dbpedia$extraction$dump$extract$ConfigLoader$$createExtractionJob(ConfigLoader.scala:52)
>>>> >>>
>>>> >>> at
>>>> org.dbpedia.extraction.dump.extract.ConfigLoader$$anonfun$getExtractionJobs$1.apply(ConfigLoader.scala:37)
>>>> >>>
>>>> >>> at
>>>> org.dbpedia.extraction.dump.extract.ConfigLoader$$anonfun$getExtractionJobs$1.apply(ConfigLoader.scala:37)
>>>> >>>
>>>> >>> at
>>>> scala.collection.GenTraversableViewLike$Mapped$$anonfun$foreach$2.apply(GenTraversableViewLike.scala:81)
>>>> >>>
>>>> >>> at
>>>> scala.collection.Iterator$class.foreach(Iterator.scala:727)
>>>> >>>
>>>> >>> at
>>>> scala.collection.immutable.RedBlackTree$TreeIterator.foreach(RedBlackTree.scala:422)
>>>> >>>
>>>> >>> at
>>>> scala.collection.IterableLike$class.foreach(IterableLike.scala:72)
>>>> >>>
>>>> >>> at
>>>> scala.collection.IterableLike$$anon$1.foreach(IterableLike.scala:294)
>>>> >>>
>>>> >>> at
>>>> scala.collection.GenTraversableViewLike$Mapped$class.foreach(GenTraversableViewLike.scala:80)
>>>> >>>
>>>> >>> at
>>>> scala.collection.IterableViewLike$$anon$3.foreach(IterableViewLike.scala:84)
>>>> >>>
>>>> >>> at
>>>> org.dbpedia.extraction.dump.extract.Extraction$.main(Extraction.scala:30)
>>>> >>>
>>>> >>> at
>>>> org.dbpedia.extraction.dump.extract.Extraction.main(Extraction.scala)
>>>> >>>
>>>> >>> ... 6 more
>>>> >>>
>>>> >>>
>>>> >>>
>>>> >>>
>>>> ------------------------------------------------------------------------------
>>>> >>> Meet PCI DSS 3.0 Compliance Requirements with EventLog Analyzer
>>>> >>> Achieve PCI DSS 3.0 Compliant Status with Out-of-the-box PCI DSS
>>>> Reports
>>>> >>> Are you Audit-Ready for PCI DSS 3.0 Compliance? Download White paper
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>>>> >>>
>>>> http://pubads.g.doubleclick.net/gampad/clk?id=154622311&iu=/4140/ostg.clktrk
>>>> >>>
>>>> >>>
>>>> >>>
>>>> >>> _______________________________________________
>>>> >>> Dbpedia-discussion mailing list
>>>> >>> Dbpedia-discussion@lists.sourceforge.net
>>>> >>> https://lists.sourceforge.net/lists/listinfo/dbpedia-discussion
>>>> >>>
>>>> >>>
>>>> >>>
>>>> >>>
>>>> >>>
>>>> ------------------------------------------------------------------------------
>>>> >>> Meet PCI DSS 3.0 Compliance Requirements with EventLog Analyzer
>>>> >>> Achieve PCI DSS 3.0 Compliant Status with Out-of-the-box PCI DSS
>>>> Reports
>>>> >>> Are you Audit-Ready for PCI DSS 3.0 Compliance? Download White paper
>>>> >>> Comply to PCI DSS 3.0 Requirement 10 and 11.5 with EventLog Analyzer
>>>> >>>
>>>> http://pubads.g.doubleclick.net/gampad/clk?id=154622311&iu=/4140/ostg.clktrk
>>>> >>> _______________________________________________
>>>> >>> Dbpedia-discussion mailing list
>>>> >>> Dbpedia-discussion@lists.sourceforge.net
>>>> >>> https://lists.sourceforge.net/lists/listinfo/dbpedia-discussion
>>>> >>>
>>>> >>
>>>> >>
>>>> >>
>>>> >> --
>>>> >> Kontokostas Dimitris
>>>> >>
>>>> >>
>>>> ------------------------------------------------------------------------------
>>>> >> Meet PCI DSS 3.0 Compliance Requirements with EventLog Analyzer
>>>> >> Achieve PCI DSS 3.0 Compliant Status with Out-of-the-box PCI DSS
>>>> Reports
>>>> >> Are you Audit-Ready for PCI DSS 3.0 Compliance? Download White paper
>>>> >> Comply to PCI DSS 3.0 Requirement 10 and 11.5 with EventLog Analyzer
>>>> >>
>>>> http://pubads.g.doubleclick.net/gampad/clk?id=154622311&iu=/4140/ostg.clktrk
>>>> >> _______________________________________________
>>>> >> Dbpedia-discussion mailing list
>>>> >> Dbpedia-discussion@lists.sourceforge.net
>>>> >> https://lists.sourceforge.net/lists/listinfo/dbpedia-discussion
>>>> >>
>>>>
>>>
>>>
>>
>>
>> --
>> Kontokostas Dimitris
>>
>
>
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