Dear dealii-ers
I am ghetting this strange and annoyuing error message from the
dealii-dev when running example programs. Some compile and work fine,
some do not, apparently quite randomly. Step-4, hangs...
I don't know what has changed recently in dealii-dev :-|
I compile dealii with this:
./configure --with-petsc=/home/tyoung/research.code/petsc-3.0.0-p10
--with-petsc-arch=linux-gnu-cxx-debug
--with-slepc=/home/tyoung/research.code/slepc-3.0.0-p7 --disable-threads
I'm on revision: 20369
I am convinved that this is not a petsc or slepc issue... I also
know this is not connected with 3d only. Problem is I have no idea how
to begin seeking out where this is coming from. Any ideas please?
Many thanks in advance.
Best,
Toby
This happens in step-20:
Number of active cells: 64
Total number of cells: 85
Number of degrees of freedom: 208 (144+64)
15 CG Schur complement iterations to obtain convergence.
Errors: ||e_p||_L2 = 0.178055, ||e_u||_L2 = 0.0433435
*** glibc detected *** ./step-20: munmap_chunk(): invalid pointer:
0x0000000000665038 *** ======= Backtrace: =========
/lib/libc.so.6[0x7f82894d3f4d]
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/libstdc++.so.6(_ZdlPv+0x1c)[0x7f8289d17784]
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/libstdc++.so.6[0x7f8289cf4d79]
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/libstdc++.so.6(_ZNSs4_Rep10_M_destroyERKSaIcE+0x42)[0x7f8289cf4dbe]
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/libstdc++.so.6(_ZNSs4_Rep10_M_disposeERKSaIcE+0x54)[0x7f8289cf4e22]
/usr/lib/gcc/x86_64-pc-linux-gnu/4.1.2/libstdc++.so.6(_ZNSsD1Ev+0x2f)[0x7f8289cf4e53]
./step-20(_ZSt8_DestroyISsEvPT_+0x15)[0x434455]
./step-20(_ZSt13__destroy_auxIPSsEvT_S1_12__false_type+0x1b)[0x434473]
./step-20(_ZSt8_DestroyIPSsEvT_S1_+0x24)[0x4344a8]
./step-20(_ZSt8_DestroyIPSsSsEvT_S1_SaIT0_E+0x21)[0x4344cb]
./step-20(_ZNSt6vectorISsSaISsEED1Ev+0x3a)[0x436c10]
/home/tyoung/research.code/deal.II/lib/libdeal_II_3d.g.so.6.3.pre[0x7f828cc20e20]
/lib/libc.so.6(__cxa_finalize+0x94)[0x7f82894972c4]
/home/tyoung/research.code/deal.II/lib/libdeal_II_3d.g.so.6.3.pre[0x7f828c6f60e3]
Memory map follows:
======= Memory map: ========
00400000-00459000 r-xp 00000000 03:04
8922409
/home/tyoung/research.code/deal.II/examples/step-20/step-20
00658000-0065b000 r--p 00058000 03:04
8922409
/home/tyoung/research.code/deal.II/examples/step-20/step-20
0065b000-0065c000 rw-p 0005b000 03:04
8922409
/home/tyoung/research.code/deal.II/examples/step-20/step-20
0065c000-00694000 rw-p 00000000 00:00
0 [heap] 7f82872af000-7f8287349000
r-xp 00000000 03:03
2441500
/usr/lib64/gcc/x86_64-pc-linux-gnu/4.1.2/libgfortran.so.1.0.0
7f8287349000-7f8287549000 ---p 0009a000 03:03
2441500
/usr/lib64/gcc/x86_64-pc-linux-gnu/4.1.2/libgfortran.so.1.0.0
7f8287549000-7f828754a000 r--p 0009a000 03:03
2441500
/usr/lib64/gcc/x86_64-pc-linux-gnu/4.1.2/libgfortran.so.1.0.0
7f828754a000-7f828754b000 rw-p 0009b000 03:03
2441500
/usr/lib64/gcc/x86_64-pc-linux-gnu/4.1.2/libgfortran.so.1.0.0
7f828754b000-7f828754d000 r-xp 00000000 03:03
165930 /lib64/libdl-2.10.1.so
7f828754d000-7f828774d000 ---p 00002000 03:03
165930 /lib64/libdl-2.10.1.so
7f828774d000-7f828774e000 r--p 00002000 03:03
165930 /lib64/libdl-2.10.1.so
7f828774e000-7f828774f000 rw-p 00003000 03:03
165930 /lib64/libdl-2.10.1.so
7f828774f000-7f82877a3000 r-xp 00000000 03:03
2876501 /usr/lib64/blas/reference/libblas.so.0.0.0
7f82877a3000-7f82879a3000 ---p 00054000 03:03
2876501 /usr/lib64/blas/reference/libblas.so.0.0.0
7f82879a3000-7f82879a4000 r--p 00054000 03:03
2876501 /usr/lib64/blas/reference/libblas.so.0.0.0
7f82879a4000-7f82879a5000 rw-p 00055000 03:03
2876501 /usr/lib64/blas/reference/libblas.so.0.0.0
7f82879a5000-7f8287de4000 r-xp 00000000 03:03
2384792 /usr/lib64/lapack/reference/liblapack.so.0.0.0
7f8287de4000-7f8287fe3000 ---p 0043f000 03:03
2384792 /usr/lib64/lapack/reference/liblapack.so.0.0.0
7f8287fe3000-7f8287fe4000 r--p 0043e000 03:03
2384792 /usr/lib64/lapack/reference/liblapack.so.0.0.0
7f8287fe4000-7f8287fe8000 rw-p 0043f000 03:03
2384792 /usr/lib64/lapack/reference/liblapack.so.0.0.0
7f8287fe8000-7f82880f5000 rw-p 00000000 00:00 0
7f82880f5000-7f828823f000 r-xp 00000000 03:04
9232914
/home/tyoung/research.code/petsc-3.0.0-p10/linux-gnu-cxx-debug/lib/libpetsc.so
7f828823f000-7f828843e000 ---p 0014a000 03:04
9232914
/home/tyoung/research.code/petsc-3.0.0-p10/linux-gnu-cxx-debug/lib/libpetsc.so
7f828843e000-7f828843f000 r--p 00149000 03:04
9232914
/home/tyoung/research.code/petsc-3.0.0-p10/linux-gnu-cxx-debug/lib/libpetsc.so
7f828843f000-7f8288441000 rw-p 0014a000 03:04
9232914
/home/tyoung/research.code/petsc-3.0.0-p10/linux-gnu-cxx-debug/lib/libpetsc.so
7f8288441000-7f828844c000 rw-p 00000000 00:00 0
7f828844c000-7f828853f000 r-xp 00000000 03:04
9232741
/home/tyoung/research.code/petsc-3.0.0-p10/linux-gnu-cxx-debug/lib/libpetscvec.so
7f828853f000-7f828873e000 ---p 000f3000 03:04
9232741
/home/tyoung/research.code/petsc-3.0.0-p10/linux-gnu-cxx-debug/lib/libpetscvec.so
7f828873e000-7f828873f000 r--p 000f2000 03:04
9232741
/home/tyoung/research.code/petsc-3.0.0-p10/linux-gnu-cxx-debug/lib/libpetscvec.so
7f828873f000-7f8288741000 rw-p 000f3000 03:04
9232741
/home/tyoung/research.code/petsc-3.0.0-p10/linux-gnu-cxx-debug/lib/libpetscvec.so
7f8288741000-7f8288742000 rw-p 00000000 00:00 0
7f8288742000-7f8288afb000 r-xp 00000000 03:04
9232858
/home/tyoung/research.code/petsc-3.0.0-p10/linux-gnu-cxx-debug/lib/libpetscmat.so
7f8288afb000-7f8288cfa000 ---p 003b9000 03:04
9232858
/home/tyoung/research.code/petsc-3.0.0-p10/linux-gnu-cxx-debug/lib/libpetscmat.so
7f8288cfa000-7f8288cfc000 r--p 003b8000 03:04
9232858
/home/tyoung/research.code/petsc-3.0.0-p10/linux-gnu-cxx-debug/lib/libpetscmat.so
7f8288cfc000-7f8288d01000 rw-p 003ba000 03:04
9232858
/home/tyoung/research.code/petsc-3.0.0-p10/linux-gnu-cxx-debug/lib/libpetscmat.so
7f8288d01000-7f8288d02000 rw-p 00000000 00:00 0
7f8288d02000-7f8288dc8000 r-xp 00000000 03:04
9232739
/home/tyoung/research.code/petsc-3.0.0-p10/linux-gnu-cxx-debug/lib/libpetscdm.so
7f8288dc8000-7f8288fc7000 ---p 000c6000 03:04
9232739
/home/tyoung/research.code/petsc-3.0.0-p10/linux-gnu-cxx-debug/lib/libpetscdm.so
7f8288fc7000-7f8288fc8000 r--p 000c5000 03:04
9232739
/home/tyoung/research.code/petsc-3.0.0-p10/linux-gnu-cxx-debug/lib/libpetscdm.soAborted
--
Toby D. Young
Philosphy-Physics
Assitant Professor (Adiunkt)
Polish Academy of Sciences
Warszawa, Polska
www: http://www.ippt.gov.pl/~tyoung
skype: stenografia
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