Thank you Dr. Bangerth, That was the problem. I removed the mpicc/mpi* under /usr/local/bin the configure error is fixed. Now the compilation is okay but linking failed because of library names are different:
g++: error: /usr/lib/*libtrilinos_trilinos_msqutil.so*: No such file or directory ... the system installed lib names existing are: */usr/lib/libtrilinos_msqutil.so* ... I need create soft links to make it available to deal.II settings, wondering why the naming is so long, maybe that is because of trilinos itself but debian made it simple. Sincerely, Jichao *Jichao Yin* Email: [email protected] LinkedIn: http://www.linkedin.com/in/jichao On Mon, Oct 17, 2011 at 9:35 AM, Wolfgang Bangerth <[email protected]>wrote: > > > Attached is the config.log > > This is the critical part of the log file: > ............................................. > configure:12691: /usr/local/bin/mpiCC -o conftest > -I/usr/include/suitesparse > -DHAVE_ISNAN -DBOOST_NO_HASH -DBOOST_NO_SLIST -O2 -funroll-loops -funroll- > all-loops -fstrict-aliasing -Wuninitialized -felide-constructors > -ftemplate- > depth-128 -std=c++0x -fPIC - > I/home/jyin1/svn/deal.II/contrib/boost-1.46.1/include - > I/usr/include/suitesparse - > I/home/jyin1/svn/deal.II/contrib/boost-1.46.1/include -Wl,- > rpath,/home/jyin1/svn/deal.II/lib -lpthread -rdynamic -L/usr/lib -Wl,- > rpath,/usr/lib conftest.cpp -lamd >&5 > > /usr/lib/libmpi.so: undefined reference to `MPL_trid' > /usr/lib/libmpi.so: undefined reference to `MPL_trvalid' > /usr/lib/libmpi.so: undefined reference to `MPL_env2int' > [...] > ............................................ > > I do not know where the MPL_xxx functions come from. My best guess is that > you > are using /usr/local/bin/mpiCC to compile but that this compiler does not > match the library /usr/lib/libmpi.so that is linked in (note that one is in > /usr/local and the other in /usr) and that mpiCC therefore forgets to put > the > necessary library with the MPL_xxx functions onto the command line. I have > no > idea what exactly happens, though. > > Best > WB > > ------------------------------------------------------------------------- > Wolfgang Bangerth email: [email protected] > www: http://www.math.tamu.edu/~bangerth/ >
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