Did you "make install" without errors after configuring? Can you post your detailed.log from the build directory?
On Mon, May 1, 2017 at 11:03 AM, Tim Miley <timothy.h.mi...@gmail.com> wrote: > Hello. > > > I’m a system administrator trying to build Trilinos for inclusion into the > Deal II software. I asked this question on the Trilinos user group, but > they told me to ask here. > > > I have built Trilinos 12.10.1 with Deal II 8.4.1. > > > > I used these modules to build Trilinos and these cmake options: > > Modules used: > > 1) gnu/4.7.2 4) p4est/1.1 7) swig/3.0.12 > > 2) openmpi/2.1.0 5) hdf5/1.8.18 8) cmake/3.4.1 > > 3) superlu/5.1.2 6) parmetis/4.0.2 > > > > cmake ../trilinos-12.10.1-Source \ > > -DTrilinos_ENABLE_Sacado=ON \ > > -DTrilinos_ENABLE_Stratimikos=ON \ > > -DTrilinos_ENABLE_MueLu=ON \ > > -DCMAKE_BUILD_TYPE=RELEASE \ > > -DBLAS_LIBRARY_NAMES:STRING="blas" \ > > -DLAPACK_LIBRARY_NAMES:STRING="lapack" \ > > -DCMAKE_VERBOSE_MAKEFILE=FALSE \ > > -DTrilinos_VERBOSE_CONFIGURE=FALSE \ > > -DTPL_ENABLE_MPI=ON \ > > -DBUILD_SHARED_LIBS=ON \ > > -DCMAKE_INSTALL_PREFIX=/gpfs3/applications/trilinos/12.10.1/$MODULES_MPINAME/$MODULES_MPIVER/$MODULES_CVEN/$MODULES_CVER > \ > > -DTPL_ENABLE_MKL=OFF \ > > -DTPL_ENABLE_BLAS=ON \ > > -DTPL_ENABLE_LAPACK=ON \ > > -DTPL_BLAS_LIBRARIES='blas' \ > > -DTPL_LAPACK_LIBRARIES='lapack' \ > > -DTPL_ENABLE_Matio=OFF \ > > -DTrilinos_ENABLE_CXX11=ON \ > > -DBUILD_SHARED_LIBS=OFF > > > > I saw no notable errors, and the software installed without issues. With > Deal II, I used this: > > > > Module used: > > 1) gnu/4.7.2 4) p4est/1.1 7) swig/3.0.12 > > 2) openmpi/2.1.0 5) hdf5/1.8.18 8) cmake/3.4.1 > > 3) superlu/5.1.2 6) parmetis/4.0.2 9) trilinos/12.10.1 > > > > cmake > -DCMAKE_INSTALL_PREFIX=/gpfs3/applications/deal_II/8.4.1/$MODULES_MPINAME/$MODULES_MPIVER/$MODULES_CVEN/$MODULES_CVER > \ > > -DDEAL_II_WITH_THREADS=OFF \ > > -DDEAL_II_WITH_MPI=ON \ > > -DDEAL_II_WITH_PETSC=OFF \ > > -DDEAL_II_WITH_NETCDF=OFF \ > > -DP4EST_DIR=/gpfs3/applications/p4est/1.1/$MODULES_MPINAME/$MODULES_MPIVER/$MODULES_CVEN/$MODULES_CVER > \ > > -DHDF5_DIR=/gpfs3/applications/hdf5/1.8.18/$MODULES_MPINAME/$MODULES_MPIVER/$MODULES_CVEN/$MODULES_CVER > \ > > -DTRILINOS_DIR=/gpfs3/applications/trilinos/12.10.1/$MODULES_MPINAME/$MODULES_MPIVER/$MODULES_CVEN/$MODULES_CVER > \ > > -DDEAL_II_COMPONENT_PARAMETER_GUI=ON \ > > -DDEAL_II_WITH_P4EST=ON \ > > -DDEAL_II_WITH_TRILINOS=ON \ > > -DTrilinos_INCLUDE_DIRS=/gpfs3/applications/trilinos/12.10.1/$MODULES_MPINAME/$MODULES_MPIVER/$MODULES_CVEN/$MODULES_CVER/include > \ > > -DDEAL_II_WITH_CXX11=ON \ > > ../dealii-8.4.1 > > > > However, I get this kind of error when trying to build one of the test > files. Specifically, Step-32. > > > > Currently Loaded Modulefiles: > > 1) gnu/4.7.2 4) deal-ii/8.4.1 7) parmetis/4.0.2 > > 2) openmpi/2.1.0 5) p4est/1.1 8) swig/3.0.12 > > 3) trilinos/12.10.1 6) superlu/5.1.2 9) hdf5/1.8.18 > > [xxx step-32]$ cmake . > > -- Autopilot invoked > > ### > > # > > # Project step-32 set up with deal.II-8.4.1 found at > > # /gpfs3/applications/deal_II/8.4.1/openmpi/2.1.0/gnu/4.7.2 > > # > > # CMAKE_BUILD_TYPE: Debug > > # > > # You can now run… > > -- Configuring done > > -- Generating done > > -- Build files have been written to: /home/xxx/step-32 > > > > [xxx step-32]$ make > > Scanning dependencies of target step-32 > > Linking CXX executable step-32 > > CMakeFiles/step-32.dir/step-32.cc.o: In function > `Step32::BoussinesqFlowProblem< > > 2>::project_temperature_field()': > > /home/xxx/step-32/step-32.cc:1768: undefined reference to `void > dealii::ConstraintMatrix::distribute<dealii::TrilinosWrappers::MPI::Vector>(dealii::TrilinosWrappers::MPI::Vector&) > const' > > CMakeFiles/step-32.dir/step-32.cc.o: In function > `dealii::Solver<dealii::TrilinosWrappers::MPI::BlockVector>::~Solver()': > > /gpfs3/applications/deal_II/8.4.1/openmpi/2.1.0/gnu/4.7.2/include/deal.II/lac/solver.h:325: > undefined reference to > `dealii::GrowingVectorMemory<dealii::TrilinosWrappers::MPI::BlockVector>::~GrowingVectorMemory()' > > /gpfs3/applications/deal_II/8.4.1/openmpi/2.1.0/gnu/4.7.2/include/deal.II/lac/solver.h:325: > undefined reference to > `dealii::GrowingVectorMemory<dealii::TrilinosWrappers::MPI::BlockVector>::~GrowingVectorMemory()' > > CMakeFiles/step-32.dir/step-32.cc.o: In function > `Step32::BoussinesqFlowProblem<2>::solve()': > > /home/xxx/step-32/step-32.cc:3034: undefined reference to `void > dealii::ConstraintMatrix::distribute<dealii::TrilinosWrappers::MPI::BlockVector>(dealii::TrilinosWrappers::MPI::BlockVector&) > const' > > /home/xxx/step-32/step-32.cc:3100: undefined reference to `void > dealii::ConstraintMatrix::distribute<dealii::TrilinosWrappers::MPI::Vector>(dealii::TrilinosWrappers::MPI::Vector&) > const' > > > > This is only an excerpt from a long list of errors that look similar. So, > it looks like Trilinos libraries are missing some sort of C++ symbols. > > > > The module looks like this: > > set name trilinos > > set ver 12.10.1 > > set root /gpfs3/applications/trilinos > > set mpiroot > $root/$ver/$env(MODULES_MPINAME)/$env(MODULES_MPIVER)/$env(MODULES_CVEN)/$env(MODULES_CVER) > > prepend-path -d ":" LD_LIBRARY_PATH "${mpiroot}/lib" > > prepend-path -d ":" INCLUDE "${mpiroot}/include" > > > > setenv TRILINOS_DIR $mpiroot > > > > Has anyone seen this problem before? I have no idea how to fix the issue. > > > > -- > The deal.II project is located at > https://urldefense.proofpoint.com/v2/url?u=http-3A__www.dealii.org_&d=DwIFaQ&c=Ngd-ta5yRYsqeUsEDgxhcqsYYY1Xs5ogLxWPA_2Wlc4&r=4k7iKXbjGC8LfYxVJJXiaYVu6FRWmEjX38S7JmlS9Vw&m=PQW3rU8YJSVdw5wiQ1j8P5e1t_Q3tUhpCBVp6ONjgeg&s=EBQ43XDJx29RsurOGq7QWEnoAhv7p-xdMBIgI_8dUmQ&e= > > For mailing list/forum options, see > https://urldefense.proofpoint.com/v2/url?u=https-3A__groups.google.com_d_forum_dealii-3Fhl-3Den&d=DwIFaQ&c=Ngd-ta5yRYsqeUsEDgxhcqsYYY1Xs5ogLxWPA_2Wlc4&r=4k7iKXbjGC8LfYxVJJXiaYVu6FRWmEjX38S7JmlS9Vw&m=PQW3rU8YJSVdw5wiQ1j8P5e1t_Q3tUhpCBVp6ONjgeg&s=l0OxLMvinG43tURWRulsUrmOuKFaCBJzwEdD8np7A3Q&e= > > --- > You received this message because you are subscribed to the Google Groups > "deal.II User Group" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to dealii+unsubscr...@googlegroups.com. > For more options, visit > https://urldefense.proofpoint.com/v2/url?u=https-3A__groups.google.com_d_optout&d=DwIFaQ&c=Ngd-ta5yRYsqeUsEDgxhcqsYYY1Xs5ogLxWPA_2Wlc4&r=4k7iKXbjGC8LfYxVJJXiaYVu6FRWmEjX38S7JmlS9Vw&m=PQW3rU8YJSVdw5wiQ1j8P5e1t_Q3tUhpCBVp6ONjgeg&s=T7lCxA859zIbDvAcpyXqsleEsiK9Bsg1bdXFjRBm98Y&e= > . -- Timo Heister http://www.math.clemson.edu/~heister/ -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. 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