Hello,
I am trying to install deal.II on a cray XC50 supercomputer.
cmake -DCMAKE_INSTALL_PREFIX=~/bin/dealii-9.1.1 \
-DPREFIX_PATH=/opt/cray/pe \
-DCMAKE_CXX_COMPILER=/opt/cray/pe/craype/2.5.13/bin/CC \
-DWITH_MPI=ON \
-DWITH_PETSC=OFF -DPETSC_DIR=$PETSC_DIR -DPETSC_ARCH=$PETSC_ARCH \
-DWITH_P4EST=ON -DP4EST_DIR=~/bin/p4est-2.2 \
~/source/dealii-9.1.1
I have attached detailed.log and summary.log. Although the configuring
exits without errors, I can see in detailed.log that MPI_VERSION was not
detected correctly. The compilers were correctly detected. All other
variables are just blanks. The relevant snippet of detailed.log is as
follows:
# DEAL_II_WITH_MPI set up with external dependencies
# MPI_VERSION = 0.0
# MPI_C_COMPILER = /opt/cray/pe/craype/2.5.13/bin/cc
# MPI_CXX_COMPILER = /opt/cray/pe/craype/2.5.13/bin/CC
# MPI_Fortran_COMPILER = /opt/cray/pe/craype/2.5.13/bin/ftn
# MPI_CXX_FLAGS =
# MPI_LINKER_FLAGS =
# MPI_INCLUDE_DIRS =
# MPI_USER_INCLUDE_DIRS =
# MPI_LIBRARIES =
Is this an issue? How to fix this? I had loaded cray-mpich module before
invoking cmake and switched PrgEnv-cray with PrgEnv-gnu.
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###
#
# deal.II configuration:
# CMAKE_BUILD_TYPE: DebugRelease
# BUILD_SHARED_LIBS: ON
# CMAKE_INSTALL_PREFIX:
/home/ComptGasDynLab/vachanpotluri/bin/dealii-9.1.1
# CMAKE_SOURCE_DIR:
/home/ComptGasDynLab/vachanpotluri/source/dealii-9.1.1
# (version 9.1.1)
# CMAKE_BINARY_DIR:
/home/ComptGasDynLab/vachanpotluri/build/dealii-9.1.1
# CMAKE_CXX_COMPILER: GNU 7.2.0 on platform Linux x86_64
# /opt/cray/pe/craype/2.5.13/bin/CC
# CMAKE_C_COMPILER: /opt/cray/pe/craype/2.5.13/bin/cc
# CMAKE_Fortran_COMPILER: /opt/cray/pe/craype/2.5.13/bin/ftn
# CMAKE_GENERATOR: Unix Makefiles
#
# Base configuration (prior to feature configuration):
# DEAL_II_CXX_FLAGS: -pedantic -fPIC -Wall -Wextra
-Woverloaded-virtual -Wpointer-arith -Wsign-compare -Wsuggest-override -Wswitch
-Wsynth -Wwrite-strings -Wno-placement-new -Wno-deprecated-declarations
-Wno-literal-suffix -Wno-psabi -fopenmp-simd -std=c++17
# DEAL_II_CXX_FLAGS_RELEASE: -O2 -funroll-loops -funroll-all-loops
-fstrict-aliasing -Wno-unused-local-typedefs
# DEAL_II_CXX_FLAGS_DEBUG: -O0 -ggdb -Wa,--compress-debug-sections
# DEAL_II_LINKER_FLAGS: -Wl,--as-needed -rdynamic -fuse-ld=gold
# DEAL_II_LINKER_FLAGS_RELEASE:
# DEAL_II_LINKER_FLAGS_DEBUG: -ggdb
# DEAL_II_DEFINITIONS:
# DEAL_II_DEFINITIONS_RELEASE:
# DEAL_II_DEFINITIONS_DEBUG: DEBUG
# DEAL_II_USER_DEFINITIONS:
# DEAL_II_USER_DEFINITIONS_REL:
# DEAL_II_USER_DEFINITIONS_DEB: DEBUG
# DEAL_II_INCLUDE_DIRS
# DEAL_II_USER_INCLUDE_DIRS:
# DEAL_II_BUNDLED_INCLUDE_DIRS:
# DEAL_II_LIBRARIES:
# DEAL_II_LIBRARIES_RELEASE:
# DEAL_II_LIBRARIES_DEBUG:
# DEAL_II_COMPILER_VECTORIZATION_LEVEL: 0
#
# Configured Features (DEAL_II_ALLOW_BUNDLED = ON, DEAL_II_ALLOW_AUTODETECTION
= ON):
# ( DEAL_II_WITH_64BIT_INDICES = OFF )
# ( DEAL_II_WITH_ADOLC = OFF )
# ( DEAL_II_WITH_ARPACK = OFF )
# ( DEAL_II_WITH_ASSIMP = OFF )
# DEAL_II_WITH_BOOST set up with bundled packages
# BOOST_CXX_FLAGS = -Wno-unused-local-typedefs
# BOOST_DEFINITIONS = BOOST_NO_AUTO_PTR
# BOOST_USER_DEFINITIONS = BOOST_NO_AUTO_PTR
# BOOST_BUNDLED_INCLUDE_DIRS =
/home/ComptGasDynLab/vachanpotluri/source/dealii-9.1.1/bundled/boost-1.62.0/include
# BOOST_LIBRARIES = rt
# DEAL_II_WITH_COMPLEX_VALUES = ON
# ( DEAL_II_WITH_CUDA = OFF )
# DEAL_II_WITH_CXX14 = ON
# DEAL_II_WITH_CXX17 = ON
# ( DEAL_II_WITH_GINKGO = OFF )
# ( DEAL_II_WITH_GMSH = OFF )
# ( DEAL_II_WITH_GSL = OFF )
# ( DEAL_II_WITH_HDF5 = OFF )
# ( DEAL_II_WITH_LAPACK = OFF )
# ( DEAL_II_WITH_METIS = OFF )
# DEAL_II_WITH_MPI set up with external dependencies
# MPI_VERSION = 0.0
# MPI_C_COMPILER = /opt/cray/pe/craype/2.5.13/bin/cc
# MPI_CXX_COMPILER = /opt/cray/pe/craype/2.5.13/bin/CC
# MPI_Fortran_COMPILER = /opt/cray/pe/craype/2.5.13/bin/ftn
# MPI_CXX_FLAGS =
# MPI_LINKER_FLAGS =
# MPI_INCLUDE_DIRS =
# MPI_USER_INCLUDE_DIRS =
# MPI_LIBRARIES =
# DEAL_II_WITH_MUPARSER set up with bundled packages
# MUPARSER_BUNDLED_INCLUDE_DIRS =
/home/ComptGasDynLab/vachanpotluri/source/dealii-9.1.1/bundled/muparser_v2_2_4//include
# ( DEAL_II_WITH_NANOFLANN = OFF )
# ( DEAL_II_WITH_NETCDF = OFF )
# ( DEAL_II_WITH_OPENCASCADE = OFF )
# DEAL_II_WITH_P4EST set up with external dependencies
# P4EST_VERSION = 2.2
# P4EST_DIR = /home/ComptGasDynLab/vachanpotluri/bin/p4est-2.2
# P4EST_INCLUDE_DIRS =
/home/ComptGasDynLab/vachanpotluri/bin/p4est-2.2/FAST/include
# P4EST_USER_INCLUDE_DIRS =
/home/ComptGasDynLab/vachanpotluri/bin/p4est-2.2/FAST/include
# P4EST_LIBRARIES =
optimized;/home/ComptGasDynLab/vachanpotluri/bin/p4est-2.2/FAST/lib/libp4est.so;/home/ComptGasDynLab/vachanpotluri/bin/p4est-2.2/FAST/lib/libsc.so;debug;/home/ComptGasDynLab/vachanpotluri/bin/p4est-2.2/DEBUG/lib/libp4est.so;/home/ComptGasDynLab/vachanpotluri/bin/p4est-2.2/DEBUG/lib/libsc.so;general
# ( DEAL_II_WITH_PETSC = OFF )
# ( DEAL_II_WITH_SCALAPACK = OFF )
# ( DEAL_II_WITH_SLEPC = OFF )
# ( DEAL_II_WITH_SUNDIALS = OFF )
# ( DEAL_II_WITH_SYMENGINE = OFF )
# DEAL_II_WITH_THREADS set up with bundled packages
# TBB_VERSION = bundled
# THREADS_CXX_FLAGS = -Wno-parentheses
# THREADS_DEFINITIONS_DEBUG = TBB_USE_DEBUG;TBB_DO_ASSERT=1
# THREADS_USER_DEFINITIONS_DEBUG = TBB_USE_DEBUG;TBB_DO_ASSERT=1
# THREADS_BUNDLED_INCLUDE_DIRS =
/home/ComptGasDynLab/vachanpotluri/source/dealii-9.1.1/bundled/tbb-2018_U2/include
# THREADS_LIBRARIES = dl
# ( DEAL_II_WITH_TRILINOS = OFF )
# ( DEAL_II_WITH_UMFPACK = OFF )
# DEAL_II_WITH_ZLIB set up with external dependencies
# ZLIB_VERSION = 1.2.8
# ZLIB_INCLUDE_DIRS = /usr/include
# ZLIB_LIBRARIES = /usr/lib64/libz.so
#
# Component configuration:
# ( DEAL_II_COMPONENT_DOCUMENTATION = OFF )
# DEAL_II_COMPONENT_EXAMPLES
# ( DEAL_II_COMPONENT_PACKAGE = OFF )
# ( DEAL_II_COMPONENT_PYTHON_BINDINGS = OFF )
#
###
###
#
# deal.II configuration:
# CMAKE_BUILD_TYPE: DebugRelease
# BUILD_SHARED_LIBS: ON
# CMAKE_INSTALL_PREFIX:
/home/ComptGasDynLab/vachanpotluri/bin/dealii-9.1.1
# CMAKE_SOURCE_DIR:
/home/ComptGasDynLab/vachanpotluri/source/dealii-9.1.1
# (version 9.1.1)
# CMAKE_BINARY_DIR:
/home/ComptGasDynLab/vachanpotluri/build/dealii-9.1.1
# CMAKE_CXX_COMPILER: GNU 7.2.0 on platform Linux x86_64
# /opt/cray/pe/craype/2.5.13/bin/CC
#
# Configured Features (DEAL_II_ALLOW_BUNDLED = ON, DEAL_II_ALLOW_AUTODETECTION
= ON):
# ( DEAL_II_WITH_64BIT_INDICES = OFF )
# ( DEAL_II_WITH_ADOLC = OFF )
# ( DEAL_II_WITH_ARPACK = OFF )
# ( DEAL_II_WITH_ASSIMP = OFF )
# DEAL_II_WITH_BOOST set up with bundled packages
# DEAL_II_WITH_COMPLEX_VALUES = ON
# ( DEAL_II_WITH_CUDA = OFF )
# DEAL_II_WITH_CXX14 = ON
# DEAL_II_WITH_CXX17 = ON
# ( DEAL_II_WITH_GINKGO = OFF )
# ( DEAL_II_WITH_GMSH = OFF )
# ( DEAL_II_WITH_GSL = OFF )
# ( DEAL_II_WITH_HDF5 = OFF )
# ( DEAL_II_WITH_LAPACK = OFF )
# ( DEAL_II_WITH_METIS = OFF )
# DEAL_II_WITH_MPI set up with external dependencies
# DEAL_II_WITH_MUPARSER set up with bundled packages
# ( DEAL_II_WITH_NANOFLANN = OFF )
# ( DEAL_II_WITH_NETCDF = OFF )
# ( DEAL_II_WITH_OPENCASCADE = OFF )
# DEAL_II_WITH_P4EST set up with external dependencies
# ( DEAL_II_WITH_PETSC = OFF )
# ( DEAL_II_WITH_SCALAPACK = OFF )
# ( DEAL_II_WITH_SLEPC = OFF )
# ( DEAL_II_WITH_SUNDIALS = OFF )
# ( DEAL_II_WITH_SYMENGINE = OFF )
# DEAL_II_WITH_THREADS set up with bundled packages
# ( DEAL_II_WITH_TRILINOS = OFF )
# ( DEAL_II_WITH_UMFPACK = OFF )
# DEAL_II_WITH_ZLIB set up with external dependencies
#
# Component configuration:
# ( DEAL_II_COMPONENT_DOCUMENTATION = OFF )
# DEAL_II_COMPONENT_EXAMPLES
# ( DEAL_II_COMPONENT_PACKAGE = OFF )
# ( DEAL_II_COMPONENT_PYTHON_BINDINGS = OFF )
#
# Detailed information (compiler flags, feature configuration) can be found in
detailed.log
#
# Run $ make info to print a help message with a list of top level targets
#
###
