Hi Jean-Paul, It was another to the point advice which resolved the issue completely. Much appreciated.
Best, Behrooz On Sun, Jan 17, 2021 at 2:30 PM Jean-Paul Pelteret <jppelte...@gmail.com> wrote: > Hi Behrooz, > > When you install deal.II using Spack, it is completely isolated from the > system environment. That way, you can install multiple versions of the same > package without them conflicting with one another. Before you can use > deal.II though spack, you populate all of the environment variables with > the paths to deal.II and its dependencies. The quickest way to do this is > using "spack load" which is documented here > <https://spack.readthedocs.io/en/latest/command_index.html#spack-load> > (spack's documentation) and here > <https://github.com/dealii/dealii/wiki/deal.II-in-Spack#environment-modules> > (the deal.II wiki). For you, this would mean running "spack load > dealii@9.2" or something similar, and then simply running "cmake ." in > the tutorial folder (don't forget to delete CMakeCache.txt first). You can > also look into using filesystem views > <https://spack.readthedocs.io/en/latest/workflows.html?highlight=filesystem%20view> > and environment modules > <https://spack.readthedocs.io/en/latest/environments.html> to the same > effect. > > Best, > Jean-Paul > > On 17.01.21 12:50, Behrooz Karami wrote: > > Hi Wolfgang, > > That's true but maybe I should have given a bit of a background here. > > I have three versions of deal.ii installed at the moment. The first one > 9.0 installed through Spack, the second one 9.2 manually installed > according to procedures described in the readme file; and the third one > again 9.2 but installed through Spack. > > The reason for the third installation was exactly the same problem > mentioned here (which happened after the 2nd installation). Meaning that > during the 2nd installation I didn't call my required libraries . But as > the third attempt I decided to use Spack as it was already available on the > machine and could install all the libraries along the way. > Finally the third installation was successful according to the output log. > And when I check the config. files they are correct. I mean it seems that > installation has been done with PETSc, MPI and all other required > libraries. The configurations are also correct e.g. it has been indicated > that: > > DEAL_II_WITH_MPI = ON > DEAL_II_WITH_PETSC = ON > DEAL_II_PETSC_WITH_COMPLEX = FALSE (not OFF!) > > I attach the config. files here as a reference. > > So to me still it seems that deal.ii is not looking at the right folder. > > I have not installed deal.ii in "/usr/local" but I could see that somehow > it has been installed there (as well) probably by default! I guess it in > fact has happened during the second installation. Because I got the same > message when I was using the 2nd installation. I am not sure exactly which > of my modifications resolved it but it was revealed to me that somehow I > have a copy of deal.ii there which is called as a first choice. > > Regards, > Behrooz > > > > On Sat, Jan 16, 2021 at 5:25 PM Wolfgang Bangerth <bange...@colostate.edu> > wrote: > >> On 1/16/21 2:04 AM, Behrooz Karami wrote: >> > >> > Error! This tutorial requires a deal.II library that was configured with >> > the following options: >> > >> > DEAL_II_WITH_MPI = ON >> > DEAL_II_WITH_PETSC = ON >> > DEAL_II_PETSC_WITH_COMPLEX = OFF >> > However, the deal.II library found at /usr/local was configured with >> these >> > options >> > >> > DEAL_II_WITH_MPI = OFF >> > DEAL_II_WITH_PETSC = OFF >> > DEAL_II_PETSC_WITH_COMPLEX = >> > >> > This is while I use the >> > 'cmake -DDEAL_II_DIR=/path/to/the/source .' >> > command to address the right configurations. Also when I check the >> cmake >> > configurations in installed folder they look OK and with correct >> configurations. >> > Could you please advise me on this issue as well? >> >> Behrooz -- the error message says what the problem is. step-18 requires >> "DEAL_II_WITH_MPI=ON", but your installation has "DEAL_II_WITH_MPI=OFF", >> and >> similarly for PETSc. In order to run step-18, you need to install deal.II >> with >> a PETSc installation and with MPI installed, but you didn't. The steps >> necessary to do that are listed in the doc/readme.html file. >> >> Best >> W. >> >> -- >> ------------------------------------------------------------------------ >> Wolfgang Bangerth email: bange...@colostate.edu >> www: http://www.math.colostate.edu/~bangerth/ >> >> -- >> The deal.II project is located at http://www.dealii.org/ >> For mailing list/forum options, see >> https://groups.google.com/d/forum/dealii?hl=en >> --- >> You received this message because you are subscribed to the Google Groups >> "deal.II User Group" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to dealii+unsubscr...@googlegroups.com. >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/dealii/f176c1af-b90b-6419-7c14-d823aea058f7%40colostate.edu >> . >> > -- > The deal.II project is located at http://www.dealii.org/ > For mailing list/forum options, see > https://groups.google.com/d/forum/dealii?hl=en > --- > You received this message because you are subscribed to the Google Groups > "deal.II User Group" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to dealii+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/dealii/CAPPKNqbNm-b9YZq4fUOBRY0ZMLrTpXtbOenatNRv2sfLQZRtJQ%40mail.gmail.com > <https://groups.google.com/d/msgid/dealii/CAPPKNqbNm-b9YZq4fUOBRY0ZMLrTpXtbOenatNRv2sfLQZRtJQ%40mail.gmail.com?utm_medium=email&utm_source=footer> > . > > > -- > The deal.II project is located at http://www.dealii.org/ > For mailing list/forum options, see > https://groups.google.com/d/forum/dealii?hl=en > --- > You received this message because you are subscribed to the Google Groups > "deal.II User Group" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to dealii+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/dealii/d6683d4c-db78-ccea-13b5-0d9f9ebfca91%40gmail.com > <https://groups.google.com/d/msgid/dealii/d6683d4c-db78-ccea-13b5-0d9f9ebfca91%40gmail.com?utm_medium=email&utm_source=footer> > . > -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. 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