Alex,
This is really strange. I've never seen that error before. Can you try
to install deal.II 9.3
https://github.com/dealii/dealii/releases/tag/v9.3.0 and see if you
get the same error?
Best,
Bruno
Le lun. 7 juin 2021 à 05:54, Alex Cumberworth
<alexandercumberwo...@gmail.com> a écrit :
>
> Hello,
>
> I recompiled trilinos without tpetra to sidestep this error, but ended up
> with another error involving epetra, and apparently epetra is minimal module
> required for trilinos with deal.ii, so I cannot do the same thing.The error:
>
> [ 31%] Building CXX object
> source/numerics/CMakeFiles/obj_numerics_debug.dir/data_out_dof_data.cc.o
> In file included from
> /home/ipausers/cumberworth/src/dealii-9.2.0/source/numerics/data_out_dof_data.cc:28:
> /home/ipausers/cumberworth/src/dealii-9.2.0/include/deal.II/numerics/data_out_dof_data.templates.h:429:33:
> error: ‘EpetraWrappers’ is not a member of ‘dealii::LinearAlgebra’
> 429 | VectorHelper<LinearAlgebra::EpetraWrappers::Vector>::extract(
> | ^~~~~~~~~~~~~~
> /home/ipausers/cumberworth/src/dealii-9.2.0/include/deal.II/numerics/data_out_dof_data.templates.h:429:55:
> error: template argument 1 is invalid
> 429 | VectorHelper<LinearAlgebra::EpetraWrappers::Vector>::extract(
> | ^
> /home/ipausers/cumberworth/src/dealii-9.2.0/include/deal.II/numerics/data_out_dof_data.templates.h:430:28:
> error: ‘EpetraWrappers’ in namespace ‘dealii::LinearAlgebra’ does not name a
> type
> 430 | const LinearAlgebra::EpetraWrappers::Vector & /*vector*/,
> | ^~~~~~~~~~~~~~
> /home/ipausers/cumberworth/src/dealii-9.2.0/include/deal.II/numerics/data_out_dof_data.templates.h:430:51:
> error: expected unqualified-id before ‘&’ token
> 430 | const LinearAlgebra::EpetraWrappers::Vector & /*vector*/,
> | ^
> /home/ipausers/cumberworth/src/dealii-9.2.0/include/deal.II/numerics/data_out_dof_data.templates.h:430:50:
> error: expected ‘)’ before ‘&’ token
> 430 | const LinearAlgebra::EpetraWrappers::Vector & /*vector*/,
> | ^~
> | )
> /home/ipausers/cumberworth/src/dealii-9.2.0/include/deal.II/numerics/data_out_dof_data.templates.h:429:65:
> note: to match this ‘(’
> 429 | VectorHelper<LinearAlgebra::EpetraWrappers::Vector>::extract(
> | ^
> /home/ipausers/cumberworth/src/dealii-9.2.0/include/deal.II/numerics/data_out_dof_data.templates.h:430:51:
> error: non-member function ‘void
> dealii::internal::DataOutImplementation::extract(...)’ cannot have
> ref-qualifier
> 430 | const LinearAlgebra::EpetraWrappers::Vector & /*vector*/,
> | ^
> /home/ipausers/cumberworth/src/dealii-9.2.0/include/deal.II/numerics/data_out_dof_data.templates.h:430:51:
> error: ‘extract’ is not a template function
> make[2]: ***
> [source/numerics/CMakeFiles/obj_numerics_debug.dir/build.make:303:
> source/numerics/CMakeFiles/obj_numerics_debug.dir/data_out_dof_data.cc.o]
> Error 1
> make[1]: *** [CMakeFiles/Makefile2:3317:
> source/numerics/CMakeFiles/obj_numerics_debug.dir/all] Error 2
> make: *** [Makefile:149: all] Error 2
>
> Best,
> Alex
> On Friday, June 4, 2021 at 5:24:03 p.m. UTC+2 Alex Cumberworth wrote:
>>
>> Hi Vachan,
>>
>> Thanks for your response. This actually works. However, I still end up with
>> an incompatibility of the MPI configuration between the Trilinos library and
>> deal.ii. I ended up compiling Trilinos from source (12-4-1), but during
>> compilation of deal.ii, I have a new error:
>>
>> In file included from
>> /home/ipausers/cumberworth/src/dealii-9.2.0/include/deal.II/dofs/dof_accessor.templates.h:35,
>> from
>> /home/ipausers/cumberworth/src/dealii-9.2.0/include/deal.II/dofs/dof_accessor.h:2069,
>> from
>> /home/ipausers/cumberworth/src/dealii-9.2.0/source/numerics/data_out.cc:18:
>> /home/ipausers/cumberworth/src/dealii-9.2.0/include/deal.II/lac/read_write_vector.h:624:21:
>> error: ‘Vector’ in namespace ‘Tpetra’ does not name a template type
>> 624 | const Tpetra::Vector<Number, int, types::global_dof_index>
>> &tpetra_vector,
>> | ^~~~~~
>> /home/ipausers/cumberworth/src/dealii-9.2.0/include/deal.II/lac/read_write_vector.h:624:27:
>> error: expected ‘,’ or ‘...’ before ‘<’ token
>> 624 | const Tpetra::Vector<Number, int, types::global_dof_index>
>> &tpetra_vector,
>> | ^
>> make[2]: ***
>> [source/numerics/CMakeFiles/obj_numerics_debug.dir/build.make:82:
>> source/numerics/CMakeFiles/obj_numerics_debug.dir/data_out.cc.o] Error 1
>> make[1]: *** [CMakeFiles/Makefile2:3317:
>> source/numerics/CMakeFiles/obj_numerics_debug.dir/all] Error 2
>> make: *** [Makefile:149: all] Error 2
>>
>> The same error occurs when I use version 13 of Trilinos.
>>
>> Best,
>> Alex
>>
>> On Thursday, June 3, 2021 at 1:30:49 p.m. UTC+2 vachanpo...@gmail.com wrote:
>>>
>>> Hi Alex,
>>>
>>> I previously ran into a lot of issues when I tried to install dealii on our
>>> institute's cluster. The OS was different though and I had problems with
>>> PETSc.
>>>
>>> I don't know if this helps but this is the relevant section in
>>> dealii-9.2.0/cmake/modules/FindTRILINOS.cmake file which searches for
>>> epetra.
>>>
>>> # Look for Epetra_config.h - we'll query it to determine MPI and 64bit
>>> # indices support:
>>> #
>>> DEAL_II_FIND_FILE(EPETRA_CONFIG_H Epetra_config.h
>>> HINTS ${Trilinos_INCLUDE_DIRS}
>>>
>>> NO_DEFAULT_PATH NO_CMAKE_ENVIRONMENT_PATH NO_CMAKE_PATH
>>> NO_SYSTEM_ENVIRONMENT_PATH NO_CMAKE_SYSTEM_PATH NO_CMAKE_FIND_ROOT_PATH
>>> )
>>>
>>> Notice the hint: it is Trilinos_INCLUDE_DIRS and not TRILINOS_INCLUDE_DIRS.
>>> If your dealii version also has Trilinos in smallcase, then maybe making
>>> this change will do the job. You may even try manually adding the full path
>>> in the cmake module file as a hint.
>>>
>>> Hope this helps
>>> Vachan
>>>
>>> On Thu, 3 Jun 2021 at 15:07, Alex Cumberworth <alexanderc...@gmail.com>
>>> wrote:
>>>>
>>>> Hello,
>>>>
>>>> The file does exist and is readable. If I set a manual include flag it is
>>>> able to find it:
>>>>
>>>> CMAKE_CXX_FLAGS_DEBUGRELEASE
>>>> -I/opt/ohpc/pub/libs/gnu9/openmpi4/trilinos/13.0.0/include
>>>>
>>>> then it is able to get past this point. From the output in my previous
>>>> message, it seems that cmake is not looking in the right place for these
>>>> header files, and I have no idea how to set this properly:
>>>>
>>>> -- TRILINOS_INCLUDE_DIRS:
>>>> /include;/opt/ohpc/pub/libs/gnu9/openmpi4/hdf5/1.10.6/include;/usr/include;/opt/ohpc/pub/libs/gnu9/openmpi4/boost/1.73.0/include
>>>> -- TRILINOS_USER_INCLUDE_DIRS:
>>>> /include;/opt/ohpc/pub/libs/gnu9/openmpi4/hdf5/1.10.6/include;/usr/include;/opt/ohpc/pub/libs/gnu9/openmpi4/boost/1.73.0/include
>>>>
>>>> There are further issues past this point, but perhaps if I understand the
>>>> problem here that will help with the later issues.
>>>>
>>>> Best,
>>>> Alex
>>>>
>>>> On Tuesday, June 1, 2021 at 9:02:12 p.m. UTC+2 Wolfgang Bangerth wrote:
>>>>>
>>>>>
>>>>> Alex,
>>>>>
>>>>> > I have also tried
>>>>> >
>>>>> > cmake -DTRILINOS_DIR=/opt/ohpc/pub/libs/gnu9/openmpi4/trilinos/13.0.0
>>>>> > ..
>>>>> >
>>>>> > It is also unable to find the epetra header file.
>>>>>
>>>>> I can not tell why that would be so (but you should be able to find out by
>>>>> searching for the place in CMakeFiles/CMakeErrors.log where it shows you
>>>>> the
>>>>> command that was executed to find that file). It may be that the file just
>>>>> doesn't exist. It may be that it's not readable. It may be that the
>>>>> compiler
>>>>> finds an error in it.
>>>>>
>>>>> If you can't figure out how to use that installation, why not install
>>>>> Trilinos
>>>>> yourself in your home directory and take it from there?
>>>>>
>>>>> Best
>>>>> W.
>>>>>
>>>>>
>>>>> --
>>>>> ------------------------------------------------------------------------
>>>>> Wolfgang Bangerth email: bang...@colostate.edu
>>>>> www: http://www.math.colostate.edu/~bangerth/
>>>>>
>>>> --
>>>> The deal.II project is located at http://www.dealii.org/
>>>> For mailing list/forum options, see
>>>> https://groups.google.com/d/forum/dealii?hl=en
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>
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