Your message dated Sun, 22 Apr 2012 21:32:20 +0000
with message-id <[email protected]>
and subject line Bug#650476: fixed in epcr 2.3.12-3
has caused the Debian Bug report #650476,
regarding ncbi-epcr: 'man e-PCR famap' typos: "alignmens" x 2, "discontiguos",
"discontinuos", "Allways" x 2; "ambiquity" x 2, and "convertion"
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
650476: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=650476
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: ncbi-epcr
Version: 2.3.12-2
Severity: minor
Tags: patch
Dear Maintainer,
Found some typos in '/usr/share/man/man1/e-PCR.1.gz',
& '/usr/share/man/man1/famap.1.gz',
see attached '.diff' files.
Hope this helps...
-- System Information:
Debian Release: wheezy/sid
APT prefers unstable
APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: i386 (i686)
Kernel: Linux 3.0.0-2-686-pae (SMP w/2 CPU cores)
Locale: LANG=C, LC_CTYPE=C (charmap=ANSI_X3.4-1968) (ignored: LC_ALL set to C)
Shell: /bin/sh linked to /bin/dash
Versions of packages ncbi-epcr depends on:
ii libc6 2.13-21
ii libgcc1 1:4.6.2-5
ii libstdc++6 4.6.2-5
ncbi-epcr recommends no packages.
Versions of packages ncbi-epcr suggests:
pn bioperl <none>
-- no debconf information
--- e-PCR.1 2011-02-22 06:24:41.000000000 -0500
+++ /tmp/e-PCR.1 2011-11-29 20:57:52.424757942 -0500
@@ -21,7 +21,7 @@
.IP "\fB-g=\fI##\fR\fP " 10
Max indels allowed (default 0)
.IP "\fB-f=\fI##\fR\fP " 10
-Use ## discontiguos words, slow if ##>1
+Use ## disontiguous words, slow if ##>1
.IP "\fB-o=\fI##\fR\fP " 10
Set output file
.IP "\fB-t=\fI##\fR\fP " 10
@@ -41,9 +41,9 @@
.IP "\fB-v=\fI##\fR\fP " 10
Verbosity flags
.IP "\fB-a=\fIa|f\fR\fP " 10
-Use presize alignmens (only if gaps>0), slow
+Use presize alignments (only if gaps>0), slow
.IP "" 10
-a - Allways or f - as Fallback
+a - Always or f - as Fallback
.IP "\fB-x=\fI+-\fR\fP " 10
Use 5'-end lowercase masking of primers (default -)
.IP "\fB-u=\fI+-\fR\fP " 10
@@ -60,7 +60,7 @@
.IP "\fBG=\fI##\fR\fP " 10
Max indels allowed (default 0)
.IP "\fBF=\fI##\fR\fP " 10
-Use ## discontinuos words
+Use ## discontinuous words
.IP "\fBO=\fI##\fR\fP " 10
Set output file to ##
.IP "\fBT=\fI##\fR\fP " 10
@@ -72,9 +72,9 @@
.IP "\fBV=\fI##\fR\fP " 10
Verbosity flags
.IP "\fBA=\fIa|f\fR\fP " 10
-Use presize alignmens (only if gaps>0), slow
+Use presize alignments (only if gaps>0), slow
.IP "" 10
-a - Allways or f - as Fallback
+a - Always or f - as Fallback
.IP "\fBX=\fI+-\fR\fP " 10
Use 5'-end lowercase masking of primers (default -)
.IP "\fBU=\fI+-\fR\fP " 10
--- famap.1 2011-02-22 06:24:41.000000000 -0500
+++ /tmp/famap.1 2011-11-29 20:59:39.725935832 -0500
@@ -17,7 +17,7 @@
FASTA files for reverse e-PCR searches
.SH OPTIONS
-where cvt (convertion table) is one of:
+where cvt (conversion table) is one of:
.IP
off \- as is (default)
.IP
@@ -25,9 +25,9 @@
.IP
N \- nucleotide uppercase allowed [ACGTN]
.IP
-nx \- nucleotide with ambiquity codes allowed
+nx \- nucleotide with ambiguity codes allowed
.IP
-NX \- nucleotide with ambiquity codes uppercase
+NX \- nucleotide with ambiguity codes uppercase
.SH "EXAMPLE"
--- End Message ---
--- Begin Message ---
Source: epcr
Source-Version: 2.3.12-3
We believe that the bug you reported is fixed in the latest version of
epcr, which is due to be installed in the Debian FTP archive:
epcr_2.3.12-3.debian.tar.gz
to main/e/epcr/epcr_2.3.12-3.debian.tar.gz
epcr_2.3.12-3.dsc
to main/e/epcr/epcr_2.3.12-3.dsc
ncbi-epcr_2.3.12-3_amd64.deb
to main/e/epcr/ncbi-epcr_2.3.12-3_amd64.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated epcr package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Sun, 22 Apr 2012 22:52:29 +0200
Source: epcr
Binary: ncbi-epcr
Architecture: source amd64
Version: 2.3.12-3
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
ncbi-epcr - Tool to test a DNA sequence for the presence of sequence tagged s
Closes: 650476 667156
Changes:
epcr (2.3.12-3) unstable; urgency=low
.
[ A. Costa ]
* Corrected typos in manpages (Closes: #650476).
.
[ Charles Plessy ]
* Lifted debian/copyright to latest DEP 5 draft.
.
[ Andreas Tille ]
* debian/upstream: Took over references from debian/reference
and debian/README.Debian
* debian/control:
- Standards-Version: 3.9.3
- Fixed Vcs fields
* debian/{control,rules}: Removed explicite dependency from quilt
* debian/patches/gcc-4.7.patch: Add missing include to build using
gcc-4.7
Closes: #667156
* debian/copyright: Fix DEP5 and verify using
cme fix dpkg-copyright
* debhelper 9 (control+compat)
Checksums-Sha1:
0768b0605dd6761d3b135d7dc5fec6d9e774cdf2 1388 epcr_2.3.12-3.dsc
eb713eec2e9e1a589af05af3db62ebaaef57a9db 7661 epcr_2.3.12-3.debian.tar.gz
961a66fd47731af9480d24869a01fe98dfc70de2 229832 ncbi-epcr_2.3.12-3_amd64.deb
Checksums-Sha256:
a5eed35a99b03ef26095a210422b94a54b36dc7d62e5d546537effc99f3789ec 1388
epcr_2.3.12-3.dsc
cdf5ae6d18a2a9c5c6ce3056212e812310d42f0f87816738df390cb33506f15c 7661
epcr_2.3.12-3.debian.tar.gz
15eee55277ad857a3c910260459960a61b06dc93520d7aa376fc9602a6b1cf15 229832
ncbi-epcr_2.3.12-3_amd64.deb
Files:
c5c09778f86557fa05d570c842c166a4 1388 science optional epcr_2.3.12-3.dsc
b11e0ab30a5c066ca59c20525e447e69 7661 science optional
epcr_2.3.12-3.debian.tar.gz
fa3cb82ccd6857f8064809dd66650ef7 229832 science optional
ncbi-epcr_2.3.12-3_amd64.deb
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.12 (GNU/Linux)
iEYEARECAAYFAk+Udx8ACgkQYDBbMcCf01oshACgqiRz84IJ4F5NwFz/NOtoIOdi
9hAAnRv+kQWeYOZdTo/rEjgcsSckau31
=GobR
-----END PGP SIGNATURE-----
--- End Message ---
