Your message dated Sun, 22 Apr 2012 21:32:20 +0000
with message-id <[email protected]>
and subject line Bug#667156: fixed in epcr 2.3.12-3
has caused the Debian Bug report #667156,
regarding epcr: ftbfs with GCC-4.7
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
667156: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=667156
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: epcr
Version: 2.3.12-2
Severity: important
Tags: sid wheezy
User: [email protected]
Usertags: ftbfs-gcc-4.7
The package fails to build in a test rebuild on at least amd64 with
gcc-4.7/g++-4.7, but succeeds to build with gcc-4.6/g++-4.6. The
severity of this report may be raised before the wheezy release.
./epcr/minilcs.hpp:308:9: error: 'memset' was not declared in this scope, and
no declarations were found by argument-dependent lookup at the point of
instantiation [-fpermissive]
The full build log can be found at:
http://people.debian.org/~lucas/logs/2012/03/29-clang-gcc47/unstable-gcc47/epcr_2.3.12-2_unstable-gcc47.log
The last lines of the build log are at the end of this report.
Some hints on fixing these issues can be found at
http://gcc.gnu.org/gcc-4.7/porting_to.html
To build with GCC 4.7, either set CC=gcc-4.7 CXX=g++-4.7 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
[...]
g++ -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12\" -DVER_MAJOR=2 -DVER_MINOR=3
-DVER_BUILD=12 -DSTANDALONE=1 -c e-PCR_main.cpp -o e-PCR_main.o
make[3]: *** No rule to make target `libepcr.a', needed by `e-PCR'. Stop.
make[3]: Leaving directory `/«PKGBUILDDIR»'
make[3]: Entering directory `/«PKGBUILDDIR»'
if test -n "" ; then \
test -L || ln -s . ; \
fi
g++ -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12\" -DVER_MAJOR=2 -DVER_MINOR=3
-DVER_BUILD=12 -DSTANDALONE=1 -c famap_main.cpp -o famap_main.o
make[3]: *** No rule to make target `libepcr.a', needed by `famap'. Stop.
make[3]: Leaving directory `/«PKGBUILDDIR»'
make[3]: Entering directory `/«PKGBUILDDIR»'
if test -n "" ; then \
test -L || ln -s . ; \
fi
g++ -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12\" -DVER_MAJOR=2 -DVER_MINOR=3
-DVER_BUILD=12 -DSTANDALONE=1 -c fahash_main.cpp -o fahash_main.o
make[3]: *** No rule to make target `libepcr.a', needed by `fahash'. Stop.
make[3]: Leaving directory `/«PKGBUILDDIR»'
make[3]: Entering directory `/«PKGBUILDDIR»'
if test -n "" ; then \
test -L || ln -s . ; \
fi
g++ -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12\" -DVER_MAJOR=2 -DVER_MINOR=3
-DVER_BUILD=12 -DSTANDALONE=1 -c re-PCR_main.cpp -o re-PCR_main.o
make[3]: *** No rule to make target `libepcr.a', needed by `re-PCR'. Stop.
make[3]: Leaving directory `/«PKGBUILDDIR»'
make[2]: *** [all] Error 2
make[1]: *** [override_dh_auto_build] Error 2
make[2]: Leaving directory `/«PKGBUILDDIR»'
make[1]: Leaving directory `/«PKGBUILDDIR»'
make: *** [build-arch] Error 2
dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2
--- End Message ---
--- Begin Message ---
Source: epcr
Source-Version: 2.3.12-3
We believe that the bug you reported is fixed in the latest version of
epcr, which is due to be installed in the Debian FTP archive:
epcr_2.3.12-3.debian.tar.gz
to main/e/epcr/epcr_2.3.12-3.debian.tar.gz
epcr_2.3.12-3.dsc
to main/e/epcr/epcr_2.3.12-3.dsc
ncbi-epcr_2.3.12-3_amd64.deb
to main/e/epcr/ncbi-epcr_2.3.12-3_amd64.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated epcr package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Sun, 22 Apr 2012 22:52:29 +0200
Source: epcr
Binary: ncbi-epcr
Architecture: source amd64
Version: 2.3.12-3
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
ncbi-epcr - Tool to test a DNA sequence for the presence of sequence tagged s
Closes: 650476 667156
Changes:
epcr (2.3.12-3) unstable; urgency=low
.
[ A. Costa ]
* Corrected typos in manpages (Closes: #650476).
.
[ Charles Plessy ]
* Lifted debian/copyright to latest DEP 5 draft.
.
[ Andreas Tille ]
* debian/upstream: Took over references from debian/reference
and debian/README.Debian
* debian/control:
- Standards-Version: 3.9.3
- Fixed Vcs fields
* debian/{control,rules}: Removed explicite dependency from quilt
* debian/patches/gcc-4.7.patch: Add missing include to build using
gcc-4.7
Closes: #667156
* debian/copyright: Fix DEP5 and verify using
cme fix dpkg-copyright
* debhelper 9 (control+compat)
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Files:
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b11e0ab30a5c066ca59c20525e447e69 7661 science optional
epcr_2.3.12-3.debian.tar.gz
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--- End Message ---
