Your message dated Thu, 17 Mar 2016 10:02:47 +0000
with message-id <[email protected]>
and subject line Bug#818431: fixed in seqprep 1.1-5
has caused the Debian Bug report #818431,
regarding seqprep: please make the build reproducible
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
818431: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=818431
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: seqprep
Version: 1.1-4
Severity: wishlist
Tags: patch
User: [email protected]
Usertags: locale
X-Debbugs-Cc: [email protected]
Hi,
While working on the "reproducible builds" effort [1], we have noticed
that seqprep could not be built reproducibly.
When generating the manpages, ronn uses the local timezone in the
embedded timestamps.
The attached patch fixes this by setting the timezone to UTC before
calling ronn. Once applied, seqprep can be built reproducibly in our
current experimental framework.
[1]: https://wiki.debian.org/ReproducibleBuilds
Regards,
--
Dhole
diff -Nru seqprep-1.1/debian/changelog seqprep-1.1/debian/changelog
--- seqprep-1.1/debian/changelog 2015-09-28 13:46:56.000000000 +0200
+++ seqprep-1.1/debian/changelog 2016-03-17 00:06:55.000000000 +0100
@@ -1,3 +1,11 @@
+seqprep (1.1-4.1) UNRELEASED; urgency=medium
+
+ * Non-maintainer upload.
+ * Fix timezone to UTC when building manpages to get reproducible embedded
+ dates.
+
+ -- Eduard Sanou <[email protected]> Thu, 17 Mar 2016 00:06:36 +0100
+
seqprep (1.1-4) unstable; urgency=medium
* Really apply patch created by Graham Inggs
diff -Nru seqprep-1.1/debian/rules seqprep-1.1/debian/rules
--- seqprep-1.1/debian/rules 2015-09-28 08:12:13.000000000 +0200
+++ seqprep-1.1/debian/rules 2016-03-17 00:06:19.000000000 +0100
@@ -9,7 +9,7 @@
override_dh_auto_build:
dh_auto_build
cp SeqPrep seqprep
- ronn -r --manual=seqprep --organization='Cancer Therapeutics Innovation
Group' debian/seqprep.1.ronn
+ TZ=UTC ronn -r --manual=seqprep --organization='Cancer Therapeutics
Innovation Group' debian/seqprep.1.ronn
markdown_py -f README.html README.md
override_dh_clean:
signature.asc
Description: PGP signature
--- End Message ---
--- Begin Message ---
Source: seqprep
Source-Version: 1.1-5
We believe that the bug you reported is fixed in the latest version of
seqprep, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated seqprep package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 17 Mar 2016 08:40:56 +0100
Source: seqprep
Binary: seqprep seqprep-data
Architecture: source
Version: 1.1-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
seqprep - stripping adaptors and/or merging paired reads of DNA sequences w
seqprep-data - example data set for seqprep - only used for testing
Closes: 818431
Changes:
seqprep (1.1-5) unstable; urgency=medium
.
* Fix timezone to UTC when building manpages to get reproducible embedded
dates. (Thanks for the patch to Dhole <[email protected]>)
Closes: #818431
* cme fix dpkg-control
* Better hardening
* Suppress lintian warning about verbose copies of gz files
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