Your message dated Sun, 02 Dec 2018 11:04:40 +0000
with message-id <[email protected]>
and subject line Bug#914715: fixed in mafft 7.407-2
has caused the Debian Bug report #914715,
regarding mafft FTCBFS: builds for the wrong architecture
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
914715: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=914715
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: mafft
Version: 7.402-1
Tags: patch
User: [email protected]
Usertags: rebootstrap
mafft fails to cross build from source, because it builds for the wrong
architecture. Using dh_auto_build fixes that. While implementing the
patch, I noticed that the --sourcedirectory flag makes the packaging a
bit easier, so that's included in the attached patch. Please consider
applying it.
Helmut
diff --minimal -Nru mafft-7.402/debian/changelog mafft-7.402/debian/changelog
--- mafft-7.402/debian/changelog 2018-05-28 16:17:10.000000000 +0200
+++ mafft-7.402/debian/changelog 2018-11-26 17:20:38.000000000 +0100
@@ -1,3 +1,11 @@
+mafft (7.402-1.1) UNRELEASED; urgency=medium
+
+ * Non-maintainer upload.
+ * Fix FTCBFS: Let dh_auto_build pass cross tools to make. (Closes: #-1)
+ * Also simplify debian/rules using --sourcedirectory.
+
+ -- Helmut Grohne <[email protected]> Mon, 26 Nov 2018 17:20:38 +0100
+
mafft (7.402-1) unstable; urgency=medium
* New upstream version
diff --minimal -Nru mafft-7.402/debian/rules mafft-7.402/debian/rules
--- mafft-7.402/debian/rules 2018-05-28 16:17:10.000000000 +0200
+++ mafft-7.402/debian/rules 2018-11-26 17:20:38.000000000 +0100
@@ -8,10 +8,10 @@
export DEB_BUILD_MAINT_OPTIONS = hardening=+all
%:
- dh $@
+ dh $@ --sourcedirectory=core
override_dh_auto_build:
- $(MAKE) -C core \
+ dh_auto_build -- \
PREFIX=/usr/lib/mafft \
ENABLE_MULTITHREAD=-Denablemultithread \
LIBDIR=/usr/lib/mafft/lib/mafft \
@@ -19,14 +19,13 @@
LDFLAGS="$(shell dpkg-buildflags --get LDFLAGS)"
override_dh_clean:
- [ ! -f core/Makefile ] || $(MAKE) -C core clean
rm -rf binaries/* scripts/*
dh_clean
MAFFT = MAFFT_BINARIES=$(CURDIR)/binaries scripts/mafft
-override_dh_install:
- $(MAKE) -C core PREFIX=$(CURDIR)/debian/mafft/usr/lib/mafft
MANDIR=$(CURDIR)/debian/mafft/usr/share/man/man1
LIBDIR=$(CURDIR)/debian/mafft/usr/lib/mafft/lib/mafft install
+override_dh_auto_install:
+ dh_auto_install -- PREFIX=/usr/lib/mafft MANDIR=/usr/share/man/man1
LIBDIR=/usr/lib/mafft/lib/mafft
rm debian/mafft/usr/lib/mafft/lib/mafft/*.1
override_dh_compress:
--- End Message ---
--- Begin Message ---
Source: mafft
Source-Version: 7.407-2
We believe that the bug you reported is fixed in the latest version of
mafft, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated mafft package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sun, 02 Dec 2018 11:39:45 +0100
Source: mafft
Binary: mafft
Architecture: source
Version: 7.407-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
mafft - Multiple alignment program for amino acid or nucleotide sequences
Closes: 914715
Changes:
mafft (7.407-2) unstable; urgency=medium
.
[ Helmut Grohne ]
* Fix FTCBFS: Let dh_auto_build pass cross tools to make. (Closes: #914715)
* Also simplify debian/rules using --sourcedirectory.
.
[ Andreas Tille ]
* Remove trailing whitespace in debian/changelog
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