Your message dated Tue, 16 Jan 2024 11:34:05 +0000
with message-id <[email protected]>
and subject line Bug#1045994: fixed in mdtraj 1.9.9-1
has caused the Debian Bug report #1045994,
regarding mdtraj: Fails to build source after successful build
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1045994: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1045994
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: mdtraj
Version: 1.9.7-6
Severity: minor
Tags: trixie sid ftbfs
User: [email protected]
Usertags: ftbfs-sab-20230813 ftbfs-source-after-build
User: [email protected]
Usertags: qa-doublebuild
Hi,
This package fails to build a source package after a successful build
(dpkg-buildpackage ; dpkg-buildpackage -S).
This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.
More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild
Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env
> -us -uc -rfakeroot -S
> -------------------------------------------------------------------------------------------------------------------
>
> dpkg-buildpackage: info: source package mdtraj
> dpkg-buildpackage: info: source version 1.9.7-6
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Drew Parsons <[email protected]>
> dpkg-source --before-build .
> dpkg-source: info: using options from mdtraj-1.9.7/debian/source/options:
> --extend-diff-ignore=^[^/]*[.]egg-info/
> fakeroot debian/rules clean
> dh clean --with python3,sphinxdoc --buildsystem=pybuild
> debian/rules override_dh_auto_clean
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> dh_auto_clean || /bin/true
> I: pybuild base:275: python3.11 setup.py clean
> Using built-in specs.
> COLLECT_GCC=/usr/bin/x86_64-linux-gnu-gcc
> COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-linux-gnu/13/lto-wrapper
> OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa
> OFFLOAD_TARGET_DEFAULT=1
> Target: x86_64-linux-gnu
> Configured with: ../src/configure -v --with-pkgversion='Debian 13.2.0-2'
> --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs
> --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr
> --with-gcc-major-version-only --program-suffix=-13
> --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id
> --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix
> --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu
> --enable-libstdcxx-debug --enable-libstdcxx-time=yes
> --with-default-libstdcxx-abi=new --enable-gnu-unique-object
> --disable-vtable-verify --enable-plugin --enable-default-pie
> --with-system-zlib --enable-libphobos-checking=release
> --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch
> --disable-werror --enable-cet
> --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32
> --enable-multilib --with-tune=generic
> --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-13-13.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/reproducible-path/gcc-13-13.2.0/debian/tmp-gcn/usr
> --enable-offload-defaulted --without-cuda-driver --enable-checking=release
> --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
> --with-build-config=bootstrap-lto-lean --enable-link-serialization=2
> Thread model: posix
> Supported LTO compression algorithms: zlib zstd
> gcc version 13.2.0 (Debian 13.2.0-2)
> /<<PKGBUILDDIR>>/basesetup.py:431: UserWarning: Unrecognized setuptools
> command ('clean'), proceeding with generating Cython sources and expanding
> templates
> warnings.warn("Unrecognized setuptools command ('{}'), proceeding with "
> /usr/lib/python3/dist-packages/pythran/tables.py:4530: FutureWarning: In the
> future `np.bool` will be defined as the corresponding NumPy scalar.
> if not hasattr(numpy, method):
> /usr/lib/python3/dist-packages/pythran/tables.py:4563: FutureWarning: In the
> future `np.bytes` will be defined as the corresponding NumPy scalar.
> obj = getattr(themodule, elem)
> warning: mdtraj/formats/dcd/dcdlib.pxd:12:12: Non-trivial type declarators in
> shared declaration (e.g. mix of pointers and values). Each pointer
> declaration should be on its own line.
> warning: mdtraj/formats/dcd/dcdlib.pxd:12:16: Non-trivial type declarators in
> shared declaration (e.g. mix of pointers and values). Each pointer
> declaration should be on its own line.
> warning: mdtraj/formats/dcd/dcdlib.pxd:12:20: Non-trivial type declarators in
> shared declaration (e.g. mix of pointers and values). Each pointer
> declaration should be on its own line.
> C compiler:
> Attempting to autodetect OpenMP support... Compiler supports OpenMP
> Attempting to autodetect SSE3 support... Compiler supports SSE3
> Attempting to autodetect SSE4.1 support... Compiler supports SSE4.1
> Attempting to autodetect NEON support... Did not detect NEON support
>
> [ 1/12] Cythonizing mdtraj/formats/dcd/dcd.pyx
> [ 2/12] Cythonizing mdtraj/geometry/drid.pyx
> [ 3/12] Cythonizing mdtraj/geometry/neighborlist.pyx
> [ 4/12] Cythonizing mdtraj/geometry/neighbors.pyx
> [ 5/12] Cythonizing mdtraj/geometry/src/_geometry.pyx
> [ 6/12] Cythonizing mdtraj/rmsd/_lprmsd.pyx
> [ 7/12] Cythonizing mdtraj/formats/binpos/binpos.pyx
> [ 8/12] Cythonizing mdtraj/formats/dtr/dtr.pyx
> [ 9/12] Cythonizing mdtraj/formats/tng/tng.pyx
> [10/12] Cythonizing mdtraj/formats/xtc/trr.pyx
> [11/12] Cythonizing mdtraj/formats/xtc/xtc.pyx
> [12/12] Cythonizing mdtraj/rmsd/_rmsd.pyx
> running clean
> removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_mdtraj/build' (and
> everything under it)
> 'build/bdist.linux-x86_64' does not exist -- can't clean it
> 'build/scripts-3.11' does not exist -- can't clean it
> for f in mdtraj/formats/binpos/binpos.c \
> mdtraj/formats/dcd/dcd.c \
> mdtraj/formats/dtr/dtr.cpp \
> mdtraj/formats/tng/tng.c \
> mdtraj/formats/xtc/trr.c \
> mdtraj/formats/xtc/xtc.c \
> mdtraj/geometry/drid.cpp \
> mdtraj/geometry/neighborlist.cpp \
> mdtraj/geometry/neighbors.cpp \
> mdtraj/geometry/src/_geometry.cpp \
> mdtraj/rmsd/_lprmsd.cpp \
> mdtraj/rmsd/_rmsd.cpp \
> mdtraj/version.py; \
> do rm -f $f; done
> rm -rf __pycache__
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> dh_autoreconf_clean -O--buildsystem=pybuild
> dh_clean -O--buildsystem=pybuild
> dpkg-source -b .
> dpkg-source: info: using options from mdtraj-1.9.7/debian/source/options:
> --extend-diff-ignore=^[^/]*[.]egg-info/
> dpkg-source: info: using source format '3.0 (quilt)'
> dpkg-source: info: building mdtraj using existing ./mdtraj_1.9.7.orig.tar.gz
> dpkg-source: info: using patch list from debian/patches/series
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.Topology.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.Trajectory.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.Trajectory.superpose.rst has no final
> newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.acylindricity.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.asphericity.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.baker_hubbard.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.chemical_shifts_ppm.rst has no final
> newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.chemical_shifts_shiftx2.rst has no
> final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.chemical_shifts_spartaplus.rst has no
> final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.compute_J3_HN_C.rst has no final
> newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.compute_J3_HN_CB.rst has no final
> newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.compute_J3_HN_HA.rst has no final
> newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.compute_angles.rst has no final
> newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.compute_center_of_mass.rst has no
> final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.compute_chi1.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.compute_chi2.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.compute_chi3.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.compute_chi4.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.compute_contacts.rst has no final
> newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.compute_dihedrals.rst has no final
> newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.compute_directors.rst has no final
> newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.compute_displacements.rst has no final
> newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.compute_distances.rst has no final
> newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.compute_drid.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.compute_dssp.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.compute_gyration_tensor.rst has no
> final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.compute_inertia_tensor.rst has no
> final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.compute_neighbors.rst has no final
> newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.compute_nematic_order.rst has no final
> newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.compute_omega.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.compute_phi.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.compute_psi.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.compute_rdf.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.compute_rg.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file mdtraj-1.9.7/docs/api/generated/mdtraj.density.rst
> has no final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.dipole_moments.rst has no final
> newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.formats.AmberNetCDFRestartFile.rst has
> no final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.formats.AmberRestartFile.rst has no
> final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.formats.ArcTrajectoryFile.rst has no
> final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.formats.BINPOSTrajectoryFile.rst has
> no final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.formats.DCDTrajectoryFile.rst has no
> final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.formats.DTRTrajectoryFile.rst has no
> final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.formats.GroTrajectoryFile.rst has no
> final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.formats.HDF5TrajectoryFile.rst has no
> final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.formats.LAMMPSTrajectoryFile.rst has
> no final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.formats.LH5TrajectoryFile.rst has no
> final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.formats.MDCRDTrajectoryFile.rst has no
> final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.formats.NetCDFTrajectoryFile.rst has
> no final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.formats.PDBTrajectoryFile.rst has no
> final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.formats.TRRTrajectoryFile.rst has no
> final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.formats.XTCTrajectoryFile.rst has no
> final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.formats.XYZTrajectoryFile.rst has no
> final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.geometry.squareform.rst has no final
> newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.isothermal_compressability_kappa_T.rst
> has no final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.iterload.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file mdtraj-1.9.7/docs/api/generated/mdtraj.join.rst
> has no final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.kabsch_sander.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file mdtraj-1.9.7/docs/api/generated/mdtraj.load.rst
> has no final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.load_arc.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.load_binpos.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.load_dcd.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.load_dtr.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.load_frame.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.load_hdf5.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.load_hoomdxml.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.load_lammpstrj.rst has no final
> newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.load_lh5.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.load_netcdf.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.load_pdb.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.load_prmtop.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.load_trr.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.load_xml.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.load_xtc.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.load_xyz.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file mdtraj-1.9.7/docs/api/generated/mdtraj.lprmsd.rst
> has no final newline (either original or modified version)
> dpkg-source: warning: file mdtraj-1.9.7/docs/api/generated/mdtraj.open.rst
> has no final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.principal_moments.rst has no final
> newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.reindex_dataframe_by_atoms.rst has no
> final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.relative_shape_antisotropy.rst has no
> final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.reporters.DCDReporter.rst has no final
> newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.reporters.HDF5Reporter.rst has no
> final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.reporters.NetCDFReporter.rst has no
> final newline (either original or modified version)
> dpkg-source: warning: file mdtraj-1.9.7/docs/api/generated/mdtraj.rmsd.rst
> has no final newline (either original or modified version)
> dpkg-source: warning: file mdtraj-1.9.7/docs/api/generated/mdtraj.rmsf.rst
> has no final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.shrake_rupley.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.static_dielectric.rst has no final
> newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.thermal_expansion_alpha_P.rst has no
> final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.utils.box_vectors_to_lengths_and_angles.rst
> has no final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.utils.check_random_state.rst has no
> final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.utils.ensure_type.rst has no final
> newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.utils.ilen.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.utils.import_.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.utils.in_units_of.rst has no final
> newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.utils.lengths_and_angles_to_box_vectors.rst
> has no final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.utils.rotation_matrix_from_quaternion.rst
> has no final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.utils.timing.rst has no final newline
> (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.utils.uniform_quaternion.rst has no
> final newline (either original or modified version)
> dpkg-source: warning: file
> mdtraj-1.9.7/docs/api/generated/mdtraj.wernet_nilsson.rst has no final
> newline (either original or modified version)
> dpkg-source: warning: file mdtraj-1.9.7/mdtraj/core/lib/center.h has no final
> newline (either original or modified version)
> dpkg-source: error: cannot represent change to mdtraj/core/lib/libtheobald.a:
> binary file contents changed
> dpkg-source: error: add mdtraj/core/lib/libtheobald.a in
> debian/source/include-binaries if you want to store the modified binary in
> the debian tarball
> dpkg-source: error: unrepresentable changes to source
> dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 1
>
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage
> --sanitize-env -us -uc -rfakeroot -S' failed to run.
The full build log is available from:
http://qa-logs.debian.net/2023/08/13/mdtraj_1.9.7-6_unstable.log
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: mdtraj
Source-Version: 1.9.9-1
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
mdtraj, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated mdtraj package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 16 Jan 2024 11:14:21 +0100
Source: mdtraj
Architecture: source
Version: 1.9.9-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 1045994 1056815
Changes:
mdtraj (1.9.9-1) unstable; urgency=medium
.
* Team upload.
* Switch to cython3-legacy.
Closes: #1056815
* Fix clean target
Closes: #1045994
* Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Use secure URI in Homepage field.
* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository-Browse.
* Fix field name typo in debian/copyright (Comments ⇒ Comment).
* Explicitly call dh_python3 in d/rules
* d/rules: verbose
* Fix capitalisation in description
* Set hardening options
* Manually remove copy of libtheobald.a in /usr/lib/python3.1*/dist-packages
* Update python_hashbang.patch to replace all instances of /bin/env
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