Your message dated Sun, 14 Jul 2024 16:34:41 +0000
with message-id <[email protected]>
and subject line Bug#1015504: fixed in libmuscle 3.7+4565-8
has caused the Debian Bug report #1015504,
regarding libmuscle: ftbfs with LTO (link time optimization) enabled
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
1015504: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1015504
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:libmuscle
Version: 3.7+4565-7
Severity: minor
Tags: sid bookworm
User: [email protected]
Usertags: ftbfs-lto
This package currently fails to build (at least on the amd64
architecture) with link time optimizations enabled. For a background
for LTO please see
https://wiki.debian.org/ToolChain/LTO
The goal is to enable this optimization by default in an upcoming
Debian release in dpkg-buildflags for 64bit architectures. The goal
is to get this package to build with link time optimizations, or to
explicitly disable link time optimizations for this package build.
To reproduce the build failure, enable the lto optimization in
testing/unstable by adding "optimize=+lto" to DEB_BUILD_MAINT_OPTIONS
in the debian/rules file, or if this macro is unset, just set it:
export DEB_BUILD_MAINT_OPTIONS = optimize=+lto
Please try to fix the build with lto enabled, fixing the packaging or
forwarding the issue upstream. If the issue cannot be fixed,
explicitly disallow building the package with lto by adding to your
rules file:
export DEB_BUILD_MAINT_OPTIONS = optimize=-lto
or adding that string to your existing setting of DEB_BUILD_MAINT_OPTIONS.
The full build log can be found at:
http://qa-logs.debian.net/2022/06/09/dpkglto/libmuscle_3.7+4565-7_unstable_dpkglto.log
The last lines of the build log are at the end of this report.
[...]
_ZN6muscle5BreakEv@Base 3.7+4565
@@ -683,10 +683,10 @@
_ZNK6muscle11DistCalcMSA8GetCountEv@Base 3.7+4565
_ZNK6muscle12DPRegionList5LogMeEv@Base 3.7+4565
_ZNK6muscle12DPRegionList9GetDPAreaEv@Base 3.7+4565
- _ZNK6muscle12DistCalcTest13CalcDistRangeEjPf@Base 3.7+4565
- _ZNK6muscle12DistCalcTest5GetIdEj@Base 3.7+4565
- _ZNK6muscle12DistCalcTest7GetNameEj@Base 3.7+4565
- _ZNK6muscle12DistCalcTest8GetCountEv@Base 3.7+4565
+#MISSING: 3.7+4565-7# _ZNK6muscle12DistCalcTest13CalcDistRangeEjPf@Base
3.7+4565
+#MISSING: 3.7+4565-7# _ZNK6muscle12DistCalcTest5GetIdEj@Base 3.7+4565
+#MISSING: 3.7+4565-7# _ZNK6muscle12DistCalcTest7GetNameEj@Base 3.7+4565
+#MISSING: 3.7+4565-7# _ZNK6muscle12DistCalcTest8GetCountEv@Base 3.7+4565
_ZNK6muscle12ScoreHistory5LogMeEv@Base 3.7+4565
_ZNK6muscle12ScoreHistory8GetScoreEjjbb@Base 3.7+4565
_ZNK6muscle3MSA10GetAvgConsEv@Base 3.7+4565
@@ -838,20 +838,20 @@
_ZNK6muscle8EdgeList5LogMeEv@Base 3.7+4565
_ZNK6muscle8EdgeList7GetEdgeEjPjS1_@Base 3.7+4565
_ZNK6muscle8EdgeList8GetCountEv@Base 3.7+4565
-
_ZNSt6vectorIPN6muscle3SeqESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base
3.7+4565
-
(optional)_ZNSt6vectorIcSaIcEE17_M_realloc_insertIJRKcEEEvN9__gnu_cxx17__normal_iteratorIPcS1_EEDpOT_@Base
3.7+4565
-
(optional)_ZNSt6vectorIcSaIcEE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPcS1_EE@Base
3.7+4565
+#MISSING: 3.7+4565-7#
_ZNSt6vectorIPN6muscle3SeqESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base
3.7+4565
+#MISSING: 3.7+4565-7#
(optional)_ZNSt6vectorIcSaIcEE17_M_realloc_insertIJRKcEEEvN9__gnu_cxx17__normal_iteratorIPcS1_EEDpOT_@Base
3.7+4565
+#MISSING: 3.7+4565-7#
(optional)_ZNSt6vectorIcSaIcEE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPcS1_EE@Base
3.7+4565
(arch-bits=32)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base
3.7+4565
-
(arch-bits=64)_ZNSt6vectorImSaImEE17_M_realloc_insertIJRKmEEEvN9__gnu_cxx17__normal_iteratorIPmS1_EEDpOT_@Base
3.7+4565
- _ZTIN6muscle10ClustSetDFE@Base 3.7+4565
+#MISSING: 3.7+4565-7#
(arch-bits=64)_ZNSt6vectorImSaImEE17_M_realloc_insertIJRKmEEEvN9__gnu_cxx17__normal_iteratorIPmS1_EEDpOT_@Base
3.7+4565
+#MISSING: 3.7+4565-7# _ZTIN6muscle10ClustSetDFE@Base 3.7+4565
_ZTIN6muscle10DistCalcDFE@Base 3.7+4565
- _ZTIN6muscle11ClustSetMSAE@Base 3.7+4565
+#MISSING: 3.7+4565-7# _ZTIN6muscle11ClustSetMSAE@Base 3.7+4565
_ZTIN6muscle11ClusterTreeE@Base 3.7+4565
_ZTIN6muscle11DistCalcMSAE@Base 3.7+4565
- _ZTIN6muscle12DistCalcTestE@Base 3.7+4565
+#MISSING: 3.7+4565-7# _ZTIN6muscle12DistCalcTestE@Base 3.7+4565
_ZTIN6muscle3MSAE@Base 3.7+4565
- _ZTIN6muscle3SeqE@Base 3.7+4565
- _ZTIN6muscle4TreeE@Base 3.7+4565
+#MISSING: 3.7+4565-7# _ZTIN6muscle3SeqE@Base 3.7+4565
+#MISSING: 3.7+4565-7# _ZTIN6muscle4TreeE@Base 3.7+4565
_ZTIN6muscle5ClustE@Base 3.7+4565
_ZTIN6muscle6PWPathE@Base 3.7+4565
_ZTIN6muscle7SeqVectE@Base 3.7+4565
@@ -885,15 +885,15 @@
_ZTSSt12_Vector_baseIcSaIcEE@Base 3.7+4565
_ZTSSt6vectorIPN6muscle3SeqESaIS2_EE@Base 3.7+4565
_ZTSSt6vectorIcSaIcEE@Base 3.7+4565
- _ZTVN6muscle10ClustSetDFE@Base 3.7+4565
+#MISSING: 3.7+4565-7# _ZTVN6muscle10ClustSetDFE@Base 3.7+4565
_ZTVN6muscle10DistCalcDFE@Base 3.7+4565
- _ZTVN6muscle11ClustSetMSAE@Base 3.7+4565
+#MISSING: 3.7+4565-7# _ZTVN6muscle11ClustSetMSAE@Base 3.7+4565
_ZTVN6muscle11ClusterTreeE@Base 3.7+4565
_ZTVN6muscle11DistCalcMSAE@Base 3.7+4565
- _ZTVN6muscle12DistCalcTestE@Base 3.7+4565
+#MISSING: 3.7+4565-7# _ZTVN6muscle12DistCalcTestE@Base 3.7+4565
_ZTVN6muscle3MSAE@Base 3.7+4565
- _ZTVN6muscle3SeqE@Base 3.7+4565
- _ZTVN6muscle4TreeE@Base 3.7+4565
+#MISSING: 3.7+4565-7# _ZTVN6muscle3SeqE@Base 3.7+4565
+#MISSING: 3.7+4565-7# _ZTVN6muscle4TreeE@Base 3.7+4565
_ZTVN6muscle5ClustE@Base 3.7+4565
_ZTVN6muscle6PWPathE@Base 3.7+4565
_ZTVN6muscle7SeqVectE@Base 3.7+4565
dh_makeshlibs: error: failing due to earlier errors
make: *** [debian/rules:6: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--- End Message ---
--- Begin Message ---
Source: libmuscle
Source-Version: 3.7+4565-8
Done: Étienne Mollier <[email protected]>
We believe that the bug you reported is fixed in the latest version of
libmuscle, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Étienne Mollier <[email protected]> (supplier of updated libmuscle package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sun, 14 Jul 2024 18:06:32 +0200
Source: libmuscle
Architecture: source
Version: 3.7+4565-8
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Closes: 1015504 1075190
Changes:
libmuscle (3.7+4565-8) unstable; urgency=medium
.
[ Steffen Möller ]
* Add new file with ref to conda
.
[ Balint Reczey ]
* debian/libmuscle1.symbols: Mark symbols which were optimized away on
s390x as optional (Closes: #1075190)
.
[ Étienne Mollier ]
* d/libmuscle1.symbols: mark symbols trimmed by LTO builds as optional.
(Closes: #1015504)
* d/rules: force LTO builds.
This is done after ensuring all reverse dependencies are still
operating properly; there were a couple of dubious Muscle symbols
trimmed by LTO builds, but C++ inflation of intricate symbols makes it
hard to make sense whether symbols drop is harmful or not.
* d/control: declare compliance to standards version 4.7.0.
* d/control: add myself to uploaders.
* d/control: migrate from pkg-config to pkgconf.
* d/libmuscle1.lintian-overrides: delete: unused override.
* d/libmuscle1.symbols: append missing Build-Depends-Package field.
* d/libmuscle1.symbols: also flag a symbole formerly 32-bit only.
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