Your message dated Thu, 05 Dec 2024 22:20:06 +0000
with message-id <[email protected]>
and subject line Bug#1061063: fixed in h5py 3.12.1-1
has caused the Debian Bug report #1061063,
regarding armhf: h5py's tests expose unaligned memory accesses during the build
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1061063: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1061063
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:h5py
Version: 3.10.0-1
Severity: serious
Tags: sid trixie
armhf: h5py's tests expose unaligned memory accesses during the build,
this not seen with with the 3.9.0 version. You don't see this on the
Debian buildds itself, because they ignore these misalignments.
Already happens with Python 3.11.
[...]
build/h5py/_debian_h5py_serial/tests/test_dims_dimensionproxy.py::TestItems::test_empty
PASSED [ 53%]
build/h5py/_debian_h5py_serial/tests/test_dtype.py::TestVlen::test_compound
PASSED [ 53%]
build/h5py/_debian_h5py_serial/tests/test_dtype.py::TestVlen::test_compound_vlen_bool
Fatal Python error: Bus error
Current thread 0xf7959020 (most recent call first):
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_h5py_serial/build/h5py/_debian_h5py_serial/_hl/dataset.py",
line 841 in __getitem__
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_h5py_serial/build/h5py/_debian_h5py_serial/tests/test_dtype.py",
line 60 in test_compound_vlen_bool
File "/usr/lib/python3.11/unittest/case.py", line 579 in _callTestMethod
File "/usr/lib/python3.11/unittest/case.py", line 623 in run
File "/usr/lib/python3.11/unittest/case.py", line 678 in __call__
File "/usr/lib/python3/dist-packages/_pytest/unittest.py", line 333
in runtest
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 169 in
pytest_runtest_call
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 77 in
_multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 115 in
_hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 493 in
__call__
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 262 in
<lambda>
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 341 in
from_call
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 261 in
call_runtest_hook
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 222 in
call_and_report
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 133 in
runtestprotocol
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 114 in
pytest_runtest_protocol
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 77 in
_multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 115 in
_hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 493 in
__call__
File "/usr/lib/python3/dist-packages/_pytest/main.py", line 350 in
pytest_runtestloop
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 77 in
_multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 115 in
_hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 493 in
__call__
File "/usr/lib/python3/dist-packages/_pytest/main.py", line 325 in _main
File "/usr/lib/python3/dist-packages/_pytest/main.py", line 271 in
wrap_session
File "/usr/lib/python3/dist-packages/_pytest/main.py", line 318 in
pytest_cmdline_main
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 77 in
_multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 115 in
_hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 493 in
__call__
File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py",
line 169 in main
File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py",
line 192 in console_main
File "/usr/lib/python3/dist-packages/pytest/__main__.py", line 5 in
<module>
File "<frozen runpy>", line 88 in _run_code
File "<frozen runpy>", line 198 in _run_module_as_main
--- End Message ---
--- Begin Message ---
Source: h5py
Source-Version: 3.12.1-1
Done: Drew Parsons <[email protected]>
We believe that the bug you reported is fixed in the latest version of
h5py, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Drew Parsons <[email protected]> (supplier of updated h5py package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 05 Dec 2024 21:32:46 +0100
Source: h5py
Architecture: source
Version: 3.12.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<[email protected]>
Changed-By: Drew Parsons <[email protected]>
Closes: 1061063
Changes:
h5py (3.12.1-1) unstable; urgency=medium
.
[Drew Parsons]
* New upstream release
.
[Michael Hudson-Doyle]
* d/patches/fix-unaligned-access.patch: update to replace an additional
unaligned access with a memcpy to fix behaviour on armhf userland / arm64
kernels without COMPAT_ALIGNMENT_FIXUPS as found in Ubuntu.
Closes: #1061063
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