Your message dated Thu, 05 Dec 2024 22:23:20 +0000
with message-id <[email protected]>
and subject line Bug#1087097: fixed in srst2 0.2.0-13
has caused the Debian Bug report #1087097,
regarding srst2: Python SyntaxWarning
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1087097: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1087097
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: srst2
Version: 0.2.0-12
User: [email protected]
Usertags: syntaxwarning
Hi Maintainer
The SyntaxWarning below were emitted when this package was tested with
pipuarts[1].
Regards
Graham
[1] https://piuparts.debian.org/sid/source/s/srst2.html
Setting up python3 (3.12.6-1) ...
/usr/share/srst2/database_clustering/VFDB_cdhit_to_csv.py:53:
SyntaxWarning: invalid escape sequence '\('
in_brackets = re.findall('\((.*?)\)', full_name)
/usr/share/srst2/database_clustering/align_plot_tree_min3.py:28:
SyntaxWarning: invalid escape sequence '\.'
r('''
/usr/share/srst2/getmlst.py:181: SyntaxWarning: invalid escape sequence '\d'
m = re.match('>(.*)([_-])(\d*)',head).groups()
/usr/share/srst2/srst2.py:90: SyntaxWarning: invalid escape sequence '\-'
parser.add_argument('--other', type=str, help='Other arguments to
pass to bowtie2 (must be escaped, e.g. "\--no-mixed".',
required=False)
/usr/share/srst2/srst2.py:99: SyntaxWarning: invalid escape sequence '\-'
parser.add_argument('--samtools_args', type=str, help='Other
arguments to pass to samtools mpileup (must be escaped, e.g. "\-A").',
required=False)
/usr/share/srst2/srst2.py:241: SyntaxWarning: invalid escape sequence '\d'
m = re.search("NM:i:(\d+)\s",line)
--- End Message ---
--- Begin Message ---
Source: srst2
Source-Version: 0.2.0-13
Done: Étienne Mollier <[email protected]>
We believe that the bug you reported is fixed in the latest version of
srst2, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Étienne Mollier <[email protected]> (supplier of updated srst2 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 05 Dec 2024 22:13:26 +0100
Source: srst2
Architecture: source
Version: 0.2.0-13
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Closes: 1087097
Changes:
srst2 (0.2.0-13) unstable; urgency=medium
.
* syntax-warning.patch: new: fix Python SyntaxWarning. (Closes: #1087097)
* d/patches/*: normalize last update timestamp.
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