Package: wnpp Severity: wishlist Owner: Laszlo Kajan <lka...@debian.org>
-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 * Package name : python-freecontact Version : 1.1 Upstream Author : Laszlo Kajan <lka...@rostlab.org> * URL : http://rostlab.org/ * License : GPL-3+ Programming Lang: C++, Python Description : fast protein contact predictor - binding for Python FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011). FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible. A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input. jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example. This package contains the Python binding. -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.14 (GNU/Linux) iQIcBAEBAgAGBQJSOzKiAAoJEJvS1kCaDFL6J3kP/2/qfDcjegth6xBoPPM41zG2 S8aMWpSq7RZJMJ5bf/m730XNEmdRm7twEvg3Txp1r2RGqW2xda1isj8HOZHnyrUE 72pfOhzx2Eur31bKSZxdvk6gH+v8l3lCWZMewe7a3DjeGnSibEi8oNRTycpQOrOX MSXhRj8eXxYYOGHhrydrnHmTgobog3lGkRyedb3t3drUhaKhlSUN32n/xDawg9Yh HIieEqvWQxtq/4JkFQxpu59gMRxutvDtJqcxjKkgAnTB6CK3Px/XtCWMBfv1+4sH 2sHPwntSoEouLPHvtTScV4OYrs27PcXV6xvE0rAZpRzfmIfqYCz8AA4HM6HoLG8n ETxAxcSEqjKiDZqFxM+n1OazIZwtOzwlCZepy9HS3EFmluLDUekuT73jPtfSP7rf zNOJfaFnkVePZ8/ashG/0Ykn15lIK764AnZUChkLk0u2uejMIo5FN+xq3sCL5dwN Q7bFiJc/0Kgbb0ynGbK4n01aZzps54JybwTcxT+XOtcx97hBhepQ803z+rWREVNh tfGe6tSV4B2QGtX9h1sxuCXN2yAufxDIfOcFRCg/2TrkITuHsJfC8Yu/KroGX2U5 zVTeBZkkX0LVbZcn5DPWFbr1gdrgjsfoE8ImxyBqy32LL86Vmq3/KDQQdy+pkpXX rwar4214Aj2k+0770ymv =yzVT -----END PGP SIGNATURE----- -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
