Hi, Andreas, على الأحد 6 كانون الأول 2015 13:11، كتب Andreas Tille: >>> Any idea how to fix this. Htslib upstream is unresponsive even to less >>> hard issues. >>>
I was confused that you were referring to this package as Htslib (I think you also did so in your message to upstream)-- you mean Htseq here. I don't know if others were similarly confused. >> >> The recent pysam release dropped support for some deprecated interfaces >> and this package appears to have been affected. I can prepare a patch >> for those pysam issues as I did for pbcore [1] > > A patch would be cool - this would help in the advent bug squashing > effort. :-) I sent an email around the same time as yours announcing the patch is in git. I didn't realize this was the central issue of the bug report. If that's the case, I think you should just add the "Closes..." statement to the changelog. :) > >> By the way, I had checked rdepends of pysam to look out for packages >> that may have problems later on due to the change, but the only way I >> know how to do that is using apt-cache rdepends. This has limitations >> because I use Stable and can't get an up-to-date report without changing >> my sources.list > > You could create an unstable chroot and login via dchroot. At least > that's my way to have an unstable system at hand. > Thanks for the tip. regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name
