On Mon, Dec 07, 2015 at 09:57:10PM -0800, Afif Elghraoui wrote: > > This error appears like you're somehow using an old version of pysam > because AlignmentFile was introduced in 0.8.1. Are you sure you're not > accidentally building with a Jessie chroot (where pysam is at version > 0.7.7) rather than an Unstable one?
You are probably right - I can not reproduce myself ... > I just made sure my working directory was clean and tried building > again. It still works for me... Thanks for the pointer. I've uploaded now after tweaking the expected result a bit to let the single test pass. Its not nice to do this without upstream support ( :-( ) but I'm positive there is no harm done. Kind regards Andreas. -- http://fam-tille.de