Control: reassign -1 ftp.debian.org Control: severity -1 normal Control: retitle -1 RM: python-cobra [hurd-i386] -- RoM; FTBFS; platform lacks a functioning sem_open implementation
This doesn't look trivially fixable, so requesting decrufting as advised. regards Afif على السبت 2 تـمـوز 2016 16:07، كتب Andreas Beckmann: > Source: python-cobra > Version: 0.4.1-2 > Severity: important > > Hi, > > python-cobra FTBFS on hurd-i386, but the previous version built there: > > https://buildd.debian.org/status/fetch.php?pkg=python-cobra&arch=hurd-i386&ver=0.4.1-2&stamp=1464980277 > > test_double_gene_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ERROR > Exception AttributeError: "'CobraDeletionPool' object has no attribute 'processes'" in <bound method CobraDeletionPool.__del__ of <cobra.flux_analysis.deletion_worker.CobraDeletionPool object at 0x530628c>> ignored > > ====================================================================== > ERROR: test_double_gene_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/«PKGBUILDDIR»/cobra/test/flux_analysis.py", line 170, in test_double_gene_deletion > solution = double_gene_deletion(cobra_model, gene_list1=genes) > File "/«PKGBUILDDIR»/cobra/flux_analysis/double_deletion.py", line 283, in double_gene_deletion > gene_id_to_result, **kwargs) > File "/«PKGBUILDDIR»/cobra/flux_analysis/double_deletion.py", line 403, in _double_gene_deletion_fba > solver=solver, **kwargs) as pool: > File "/«PKGBUILDDIR»/cobra/flux_analysis/deletion_worker.py", line 66, in __init__ > self.job_queue = Queue() # format is (indexes, job_label) > File "/usr/lib/python2.7/multiprocessing/__init__.py", line 217, in Queue > from multiprocessing.queues import Queue > File "/usr/lib/python2.7/multiprocessing/queues.py", line 48, in <module> > from .synchronize import Lock, BoundedSemaphore, Semaphore, Condition > File "/usr/lib/python2.7/multiprocessing/synchronize.py", line 59, in <module> > " function, see issue 3770.") > ImportError: This platform lacks a functioning sem_open implementation, therefore, the required synchronization primitives needed will not function, see issue 3770. > > ---------------------------------------------------------------------- > Ran 129 tests in 6.040s > > FAILED (errors=1, skipped=11) > > > If this is not trivially fixable, please request decrufting of the > outdated binary packages: > > Control: reassign -1 ftp.debian.org > Control: severity -1 normal > Control: retitle -1 RM: python-cobra [hurd-i386] -- RoM; FTBFS; platform lacks a functioning sem_open implementation > -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name
