Package: src:python-biomaj3
Version: 3.0.20-1
Severity: serious
Justification: fails to build from source (but built successfully in the past)
Now FTBFS. See attached log.
: pybuild base:184: python3.6 setup.py clean
Traceback (most recent call last):
File "setup.py", line 18, in <module>
README = f.read()
File "/usr/lib/python3.6/encodings/ascii.py", line 26, in decode
return codecs.ascii_decode(input, self.errors)[0]
UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in position 1781:
ordinal not in range(128)
E: pybuild pybuild:283: clean: plugin distutils failed with: exit code=1:
python3.6 setup.py clean
dh_auto_clean: pybuild --clean --test-nose -i python{version} -p 3.6 3.5
returned exit code 13
debian/rules:28: recipe for target 'clean' failed
Scott K
I: Logging to
/home/kitterma/pbuilder/sid_result/python-biomaj3_3.0.20-1_amd64.build
I: using fakeroot in build.
I: Current time: Thu Jun 29 21:25:22 EDT 2017
I: pbuilder-time-stamp: 1498785922
I: Building the build Environment
I: extracting base tarball [/home/kitterma/pbuilder/sid-base.tgz]
I: creating local configuration
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for
details.
I: mounting /proc filesystem
I: mounting /run/shm filesystem
I: mounting /dev/pts filesystem
I: policy-rc.d already exists
I: Obtaining the cached apt archive contents
I: Installing the build-deps
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-ma...@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by
pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper (>= 9), dh-python, python-all, python-setuptools,
python-mock, python-nose, python-pymongo, python-tabulate, python-ldap3,
python-bcrypt, python-future, python-elasticsearch, python-pycurl,
python-drmaa, python3-all, python3-setuptools, python3-mock, python3-nose,
python3-pymongo, python3-tabulate, python3-ldap3, python3-bcrypt,
python3-future, python3-elasticsearch, python3-pycurl
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in
'/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
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Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring
anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper (>= 9); however:
Package debhelper is not installed.
pbuilder-satisfydepends-dummy depends on dh-python; however:
Package dh-python is not installed.
pbuilder-satisfydepends-dummy depends on python-all; however:
Package python-all is not installed.
pbuilder-satisfydepends-dummy depends on python-setuptools; however:
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pbuilder-satisfydepends-dummy depends on python-mock; however:
Package python-mock is not installed.
pbuilder-satisfydepends-dummy depends on python-nose; however:
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pbuilder-satisfydepends-dummy depends on python-pymongo; however:
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pbuilder-satisfydepends-dummy depends on python-tabulate; however:
Package python-tabulate is not installed.
pbuilder-satisfydepends-dummy depends on python-ldap3; however:
Package python-ldap3 is not installed.
pbuilder-satisfydepends-dummy depends on python-bcrypt; however:
Package python-bcrypt is not installed.
pbuilder-satisfydepends-dummy depends on python-future; however:
Package python-future is not installed.
pbuilder-satisfydepends-dummy depends on python-elasticsearch; however:
Package python-elasticsearch is not installed.
pbuilder-satisfydepends-dummy depends on python-pycurl; however:
Package python-pycurl is not installed.
pbuilder-satisfydepends-dummy depends on python-drmaa; however:
Package python-drmaa is not installed.
pbuilder-satisfydepends-dummy depends on python3-all; however:
Package python3-all is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
Package python3-setuptools is not installed.
pbuilder-satisfydepends-dummy depends on python3-mock; however:
Package python3-mock is not installed.
pbuilder-satisfydepends-dummy depends on python3-nose; however:
Package python3-nose is not installed.
pbuilder-satisfydepends-dummy depends on python3-pymongo; however:
Package python3-pymongo is not installed.
pbuilder-satisfydepends-dummy depends on python3-tabulate; however:
Package python3-tabulate is not installed.
pbuilder-satisfydepends-dummy depends on python3-ldap3; however:
Package python3-ldap3 is not installed.
pbuilder-satisfydepends-dummy depends on python3-bcrypt; however:
Package python3-bcrypt is not installed.
pbuilder-satisfydepends-dummy depends on python3-future; however:
Package python3-future is not installed.
pbuilder-satisfydepends-dummy depends on python3-elasticsearch; however:
Package python3-elasticsearch is not installed.
pbuilder-satisfydepends-dummy depends on python3-pycurl; however:
Package python3-pycurl is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
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pbuilder-satisfydepends-dummy is already installed at the requested version
(0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version
(0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a}
debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} file{a}
gettext{a} gettext-base{a} groff-base{a} intltool-debian{a}
libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libcurl3-gnutls{a} libexpat1{a}
libffi6{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libgnutls30{a}
libgssapi-krb5-2{a} libhogweed4{a} libicu57{a} libidn2-0{a} libjs-jquery{a}
libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a}
libkrb5-3{a} libkrb5support0{a} libldap-2.4-2{a} libldap-common{a}
libmagic-mgc{a} libmagic1{a} libmpdec2{a} libnettle6{a} libnghttp2-14{a}
libp11-kit0{a} libpipeline1{a} libpsl5{a} libpython-stdlib{a}
libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-stdlib{a}
libpython3.5-minimal{a} libpython3.5-stdlib{a} libpython3.6-minimal{a}
libpython3.6-stdlib{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a}
libsigsegv2{a} libssh2-1{a} libssl1.1{a} libtasn1-6{a} libtool{a} libun
istring0{a} libxml2{a} m4{a} man-db{a} mime-support{a} po-debconf{a} python{a}
python-all{a} python-bcrypt{a} python-bson{a} python-cffi-backend{a}
python-configparser{a} python-drmaa{a} python-elasticsearch{a}
python-funcsigs{a} python-future{a} python-ldap3{a} python-minimal{a}
python-mock{a} python-nose{a} python-pbr{a} python-pkg-resources{a}
python-pyasn1{a} python-pycurl{a} python-pymongo{a} python-setuptools{a}
python-six{a} python-tabulate{a} python-urllib3{a} python2.7{a}
python2.7-minimal{a} python3{a} python3-all{a} python3-bcrypt{a}
python3-bson{a} python3-cffi-backend{a} python3-elasticsearch{a}
python3-future{a} python3-ldap3{a} python3-minimal{a} python3-mock{a}
python3-nose{a} python3-pbr{a} python3-pkg-resources{a} python3-pyasn1{a}
python3-pycurl{a} python3-pymongo{a} python3-setuptools{a} python3-six{a}
python3-tabulate{a} python3-urllib3{a} python3.5{a} python3.5-minimal{a}
python3.6{a} python3.6-minimal{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl
libglib2.0-data libltdl-dev libmail-sendmail-perl libsasl2-modules lynx-cur
publicsuffix python-bson-ext python-cryptography python-gridfs python-idna
python-ipaddress python-openssl python-pymongo-ext python3-bson-ext
python3-gridfs python3-pymongo-ext shared-mime-info wget xdg-user-dirs xml-core
0 packages upgraded, 115 newly installed, 0 to remove and 0 not upgraded.
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No schema files found: doing nothing.
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Reading package lists...
Building dependency tree...
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Building tag database...
-> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
libfakeroot
The following NEW packages will be installed:
fakeroot libfakeroot
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/131 kB of archives.
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update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot
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Processing triggers for libc-bin (2.24-12) ...
I: Copying back the cached apt archive contents
I: Copying source file
I: copying [python-biomaj3_3.0.20-1.dsc]
I: copying [./python-biomaj3_3.0.20.orig.tar.xz]
I: copying [./python-biomaj3_3.0.20-1.debian.tar.gz]
I: Extracting source
dpkg-source: warning: extracting unsigned source package
(python-biomaj3_3.0.20-1.dsc)
dpkg-source: info: extracting python-biomaj3 in python-biomaj3-3.0.20
dpkg-source: info: unpacking python-biomaj3_3.0.20.orig.tar.xz
dpkg-source: info: unpacking python-biomaj3_3.0.20-1.debian.tar.gz
I: Building the package
I: Running cd tmp/buildd/*/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin"
dpkg-buildpackage -us -uc -rfakeroot
dpkg-buildpackage: info: source package python-biomaj3
dpkg-buildpackage: info: source version 3.0.20-1
dpkg-buildpackage: info: source distribution UNRELEASED
dpkg-buildpackage: info: source changed by Scott Kitterman <sc...@kitterman.com>
dpkg-source --before-build python-biomaj3-3.0.20
dpkg-buildpackage: info: host architecture amd64
fakeroot debian/rules clean
dh clean --with python2,python3 --buildsystem=pybuild
dh_testdir -O--buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:184: python2.7 setup.py clean
running clean
removing '/tmp/buildd/python-biomaj3-3.0.20/.pybuild/pythonX.Y_2.7/build' (and
everything under it)
'build/bdist.linux-amd64' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
I: pybuild base:184: python3.6 setup.py clean
Traceback (most recent call last):
File "setup.py", line 18, in <module>
README = f.read()
File "/usr/lib/python3.6/encodings/ascii.py", line 26, in decode
return codecs.ascii_decode(input, self.errors)[0]
UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in position 1781:
ordinal not in range(128)
E: pybuild pybuild:283: clean: plugin distutils failed with: exit code=1:
python3.6 setup.py clean
dh_auto_clean: pybuild --clean --test-nose -i python{version} -p 3.6 3.5
returned exit code 13
debian/rules:28: recipe for target 'clean' failed
make: *** [clean] Error 25
dpkg-buildpackage: error: fakeroot debian/rules clean gave error exit status 2
E: Failed autobuilding of package
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: cleaning the build env
I: removing directory /var/cache/pbuilder/build//28945 and its subdirectories
