I can confirm this. For my Lenovo ThinkPad T450s with 2 external monitors, it is exactly the same. Drove me nuts for the better part of a day until I realized it was due to 4.9.0-4. As such I'm also back to running 4.9.0-3 as a workaround.

In my case I would only* get the flickering (ie. the screen/monitor goes blank for a sec or two) in the following scenario:

1) move mouse cursor inside of my GNOME Terminal window
2) use the keyboard to type something (anything)

*With the mouse cursor hovering outside of my term window, I was safe so to say. Having said this, occasionally a monitor would also flicker when moving the mouse cursor from one external monitor to another.

B/R,
Frederik Dannemare

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