Hi Graham, On Sun, Jun 24, 2018 at 08:48:32PM +0200, Graham Inggs wrote: > Control: tags -1 + patch
thanks for the patch. Since we are targeting in Git at version 1.4.2 I adapted the patch to this version and it works for this. I also fixed another issue in the test suite[1]. Unfortunately there are remaining errors in the test suite which are all connected to a possible issue with XML files: $ grep "ERROR: Invalid file produced" python-pbcore_1.4.2+dfsg-1_amd64.build pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: /tmp/tmpiOHCZI.alignmentset.xml.disabled pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: /tmp/tmplAqR2T.alignmentset.xml pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: /tmp/tmpMyWNXh.subreadset.xml pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: /tmp/tmps4GD0E.subreadset.xml pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: /tmp/tmp71IS22dataset-unittest/test.alignmentset.xml pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: /tmp/tmpUn37tBdataset unittest/spaced.subreadset.xml pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: /tmp/tmpMouabqdataset-unittest/tempfile.xml pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: /tmp/tmpN0pUz2alignmentset.xml pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: /tmp/tmpeQ4v3jalignmentset.xml pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: /tmp/tmp0Kb6RWdataset-doctest/tempfile.xml pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: /tmp/tmpj20209.subreadset.xml pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: /tmp/tmp2XGDAY.barcodeset.xml pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: /tmp/tmpXtaXG3.consensusreadset.xml pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: /tmp/tmpJlLjAA.contigset.xml pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: /tmp/tmpDKGXFh.contigset.xml pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: /tmp/tmptZ4Kro.xml pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: /tmp/tmp6ySKmX.contigset.xml pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: /tmp/tmpvYTcX1.subreadset.xml pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: /tmp/tmpiXc1ez.subreadset.xml pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: /tmp/tmpdiSRmI.subreadset.xml pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: /tmp/tmpveTAsa.subreadset.xml Before I start diving into this: Afif, upstream seems to have released 1.5.0 which might be worth a try. While I asked for creating according release tags[2] I remember you said that upstream does not care much about this metadata. I wonder whether we should possibly use mode=git inside the watch file, inject version 1.5.0 into packaging Git, cross fingers that the issue might be fixed and if not report the issue upstream. Kind regards Andreas. [1] https://salsa.debian.org/med-team/python-pbcore/blob/master/debian/patches/relax_test_constraint.patch [2] https://github.com/PacificBiosciences/pbcore/issues/116 -- http://fam-tille.de