Hi, Andreas On June 25, 2018 3:32:00 AM EDT, Andreas Tille <ti...@debian.org> wrote: >Hi Graham, > >On Sun, Jun 24, 2018 at 08:48:32PM +0200, Graham Inggs wrote: >> Control: tags -1 + patch > >thanks for the patch. Since we are targeting in Git at version 1.4.2 I >adapted the patch to this version and it works for this. I also fixed >another issue in the test suite[1]. Unfortunately there are remaining >errors in the test suite which are all connected to a possible issue >with >XML files: > >$ grep "ERROR: Invalid file produced" >python-pbcore_1.4.2+dfsg-1_amd64.build >pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: >/tmp/tmpiOHCZI.alignmentset.xml.disabled >pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: >/tmp/tmplAqR2T.alignmentset.xml >pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: >/tmp/tmpMyWNXh.subreadset.xml >pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: >/tmp/tmps4GD0E.subreadset.xml >pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: >/tmp/tmp71IS22dataset-unittest/test.alignmentset.xml >pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: >/tmp/tmpUn37tBdataset unittest/spaced.subreadset.xml >pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: >/tmp/tmpMouabqdataset-unittest/tempfile.xml >pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: >/tmp/tmpN0pUz2alignmentset.xml >pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: >/tmp/tmpeQ4v3jalignmentset.xml >pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: >/tmp/tmp0Kb6RWdataset-doctest/tempfile.xml >pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: >/tmp/tmpj20209.subreadset.xml >pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: >/tmp/tmp2XGDAY.barcodeset.xml >pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: >/tmp/tmpXtaXG3.consensusreadset.xml >pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: >/tmp/tmpJlLjAA.contigset.xml >pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: >/tmp/tmpDKGXFh.contigset.xml >pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: >/tmp/tmptZ4Kro.xml >pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: >/tmp/tmp6ySKmX.contigset.xml >pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: >/tmp/tmpvYTcX1.subreadset.xml >pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: >/tmp/tmpiXc1ez.subreadset.xml >pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: >/tmp/tmpdiSRmI.subreadset.xml >pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: >/tmp/tmpveTAsa.subreadset.xml > > >Before I start diving into this: Afif, upstream seems to have released >1.5.0 which might be worth a try. While I asked for creating according >release tags[2] I remember you said that upstream does not care much >about this metadata. I wonder whether we should possibly use mode=git >inside the watch file, inject version 1.5.0 into packaging Git, cross >fingers that the issue might be fixed and if not report the issue >upstream. >
I believe that error had to do with the package requiring an older version of some dependency. At least, the error I was seeing at the time was for that reason, which prevented me from uploading. regards Afif . > >[1] >https://salsa.debian.org/med-team/python-pbcore/blob/master/debian/patches/relax_test_constraint.patch >[2] https://github.com/PacificBiosciences/pbcore/issues/116 > >-- >http://fam-tille.de > >_______________________________________________ >Debian-med-packaging mailing list >debian-med-packag...@alioth-lists.debian.net >https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-packaging
