Hi, I've narrowed the issue down to one (or a few) sequences. Basically this error occurs whenever a query sequence is less than five nucleotides (and is independent of the length of sequences in the database file). Besides, it's not specific to the Debian package. I encountered the same error when I compiled from the upstream source, but it went away when I downloaded the compiled binary, so it's probably something to do with the way it is compiled.
I've reported this on the Github issue page here <https://github.com/bbuchfink/diamond/issues/351> along with the smallest dataset that can be used to reproduce this issue. Maybe now we wait for upstream to take a look? Regards, Pranav ᐧ On Fri, May 22, 2020 at 3:37 AM Andreas Tille <andr...@an3as.eu> wrote: > On Thu, May 21, 2020 at 06:33:05PM +0530, Pranav Ballaney wrote: > > Yes, I've been able to reproduce and roughly pin point the issue, but it > > needs some more work before it's solved. > > That's pretty good news. Just take the time you need. > > Thanks for your effort > > Andreas. > > -- > http://fam-tille.de >