Package: wnpp Severity: wishlist Subject: ITP: seqwish -- alignment to variation graph inducer Package: wnpp Owner: Steffen Moeller <moel...@debian.org> Severity: wishlist
* Package name : seqwish Version : 0.7.1 Upstream Author : Erik Garrison * URL : https://github.com/ekg/seqwish * License : MIT Programming Lang: C++ Description : alignment to variation graph inducer Seqwish implements a lossless conversion from pairwise alignments between sequences to a variation graph encoding the sequences and their alignments. As input we typically take all-versus-all alignments, but the exact structure of the alignment set may be defined in an application specific way. This algorithm uses a series of disk-backed sorts and passes over the alignment and sequence inputs to allow the graph to be constructed from very large inputs that are commonly encountered when working with large numbers of noisy input sequences. Memory usage during construction and traversal is limited by the use of sorted disk-backed arrays and succinct rank/select dictionaries to record a queryable version of the graph. Remark: This package is maintained by Debian Med Packaging Team at https://salsa.debian.org/med-team/seqwish
