Package: libcifpp-data Version: 5.0.7.1-3 Severity: important Tags: patch Dear Maintainer,
*** Reporter, please consider answering these questions, where appropriate *** * What led up to the situation? Installing libcifpp-data via "apt install". The incorrect URL causes apt to hang for a long period of time before returrning to a prompt. As a result, the file supposed to be loaced in /var/cache/libcifpp/components.cif fails to download. The Stable version of this package was showing timeout errors when attempting to connect to https://ftp.wwpdb.org. The correct URL that is published by wwpdb.org is https://files.wwpdb.org for downloading via HTTP. This will happen durring install via apt when you are prompted Package configuration about setting up weekly downloads of these data files from wwpdb.org. * What exactly did you do (or not do) that was effective (or ineffective)? Editing the file /etc/cron.weekly/update-libcifpp-data and changing the URL for the components.cif download from https://ftp.wwpdb.org to https://files.wwpdb.org leaving all subpaths the same resolves the issue. This also helps with the stable version of this package and fixes dpkg and apt when running "dpkg --configure -a" * What was the outcome of this action? Resolves the package install and fixes apt/dpkg package management system. * What outcome did you expect instead? The expected outcome is that "apt install" will successfully install the package and be able to run the download scripts successfully. *** End of the template - remove these template lines *** -- System Information: Debian Release: 12.4 APT prefers stable APT policy: (990, 'stable'), (500, 'stable-security'), (500, 'testing') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 6.1.0-17-amd64 (SMP w/12 CPU threads; PREEMPT) Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE not set Shell: /bin/sh linked to /usr/bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages libcifpp-data depends on: ii debconf [debconf-2.0] 1.5.82 libcifpp-data recommends no packages. libcifpp-data suggests no packages. -- debconf information: * libcifpp/update: true
--- update-libcifpp-data.orig 2024-02-05 11:13:15.964579981 -0500 +++ update-libcifpp-data 2024-02-05 11:24:35.219320601 -0500 @@ -60,7 +60,7 @@ # Update the dictionaries -update_dictionary "/var/cache/libcifpp/components.cif" "https://ftp.wwpdb.org/pub/pdb/data/monomers/components.cif.gz"; +update_dictionary "/var/cache/libcifpp/components.cif" "https://files.wwpdb.org/pub/pdb/data/monomers/components.cif.gz"; update_dictionary "/var/cache/libcifpp/mmcif_pdbx.dic" "https://mmcif.wwpdb.org/dictionaries/ascii/mmcif_pdbx_v50.dic.gz"; update_dictionary "/var/cache/libcifpp/mmcif_ma.dic" "https://github.com/ihmwg/ModelCIF/raw/master/dist/mmcif_ma.dic";
