Hi Maarten, since last September there is a new upstream version in Git which was not uploaded. I see less instances of ftp.wwpdb.org in this code but there are some remainings. It would be great if you could upload your preparation after checking that the bug below is fixed.
Kind regards Andreas. Am Mon, Feb 05, 2024 at 11:27:36AM -0500 schrieb Rick Bernard: > Package: libcifpp-data > Version: 5.0.7.1-3 > Severity: important > Tags: patch > > Dear Maintainer, > > *** Reporter, please consider answering these questions, where appropriate *** > > * What led up to the situation? > Installing libcifpp-data via "apt install". The incorrect URL causes apt > to > hang for a long period of time before returrning to a prompt. As a result, > the > file supposed to be loaced in /var/cache/libcifpp/components.cif fails to > download. The Stable version of this package was showing timeout errors when > attempting to connect to https://ftp.wwpdb.org. The correct URL that is > published by wwpdb.org is https://files.wwpdb.org for downloading via HTTP. > This will happen durring install via apt when you are prompted Package > configuration about setting up weekly downloads of these data files from > wwpdb.org. > > * What exactly did you do (or not do) that was effective (or > ineffective)? > Editing the file /etc/cron.weekly/update-libcifpp-data and changing the > URL > for the components.cif download from https://ftp.wwpdb.org to > https://files.wwpdb.org leaving all subpaths the same resolves the issue. > This > also helps with the stable version of this package and fixes dpkg and apt when > running "dpkg --configure -a" > > * What was the outcome of this action? > Resolves the package install and fixes apt/dpkg package management > system. > > * What outcome did you expect instead? > The expected outcome is that "apt install" will successfully install the > package and be able to run the download scripts successfully. > > *** End of the template - remove these template lines *** > > > -- System Information: > Debian Release: 12.4 > APT prefers stable > APT policy: (990, 'stable'), (500, 'stable-security'), (500, 'testing') > Architecture: amd64 (x86_64) > Foreign Architectures: i386 > > Kernel: Linux 6.1.0-17-amd64 (SMP w/12 CPU threads; PREEMPT) > Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE not > set > Shell: /bin/sh linked to /usr/bin/dash > Init: systemd (via /run/systemd/system) > LSM: AppArmor: enabled > > Versions of packages libcifpp-data depends on: > ii debconf [debconf-2.0] 1.5.82 > > libcifpp-data recommends no packages. > > libcifpp-data suggests no packages. > > -- debconf information: > * libcifpp/update: true > --- update-libcifpp-data.orig 2024-02-05 11:13:15.964579981 -0500 > +++ update-libcifpp-data 2024-02-05 11:24:35.219320601 -0500 > @@ -60,7 +60,7 @@ > > # Update the dictionaries > > -update_dictionary "/var/cache/libcifpp/components.cif" > "https://ftp.wwpdb.org/pub/pdb/data/monomers/components.cif.gz"; > +update_dictionary "/var/cache/libcifpp/components.cif" > "https://files.wwpdb.org/pub/pdb/data/monomers/components.cif.gz"; > update_dictionary "/var/cache/libcifpp/mmcif_pdbx.dic" > "https://mmcif.wwpdb.org/dictionaries/ascii/mmcif_pdbx_v50.dic.gz"; > update_dictionary "/var/cache/libcifpp/mmcif_ma.dic" > "https://github.com/ihmwg/ModelCIF/raw/master/dist/mmcif_ma.dic"; > > _______________________________________________ > Debian-med-packaging mailing list > debian-med-packag...@alioth-lists.debian.net > https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-packaging -- http://fam-tille.de
