Source: bioxtasraw Version: 2.2.2-2 User: [email protected] Usertags: syntaxwarning
Hi Maintainer The SyntaxWarning below were emitted when this package was tested with pipuarts[1]. Regards Graham [1] https://piuparts.debian.org/sid/source/b/bioxtasraw.html Setting up python3-bioxtasraw (2.2.2-2) ... /usr/lib/python3/dist-packages/bioxtasraw/DENSS.py:467: SyntaxWarning: invalid escape sequence '\s' five_col_fit = re.compile('\s*\d*[.]\d*[+eE-]*\d+\s+-?\d*[.]\d*[+eE-]*\d+\s+\d*[.]\d*[+eE-]*\d+\s+\d*[.]\d*[+eE-]*\d+\s+\d*[.]\d*[+eE-]*\d+\s*$') /usr/lib/python3/dist-packages/bioxtasraw/DENSS.py:468: SyntaxWarning: invalid escape sequence '\s' three_col_fit = re.compile('\s*\d*[.]\d*[+eE-]*\d+\s+-?\d*[.]\d*[+eE-]*\d+\s+\d*[.]\d*[+eE-]*\d+\s*$') /usr/lib/python3/dist-packages/bioxtasraw/DENSS.py:469: SyntaxWarning: invalid escape sequence '\s' two_col_fit = re.compile('\s*\d*[.]\d*[+eE-]*\d+\s+-?\d*[.]\d*[+eE-]*\d+\s*$') /usr/lib/python3/dist-packages/bioxtasraw/DENSS.py:471: SyntaxWarning: invalid escape sequence '\s' results_fit = re.compile('\s*Current\s+\d*[.]\d*[+eE-]*\d*\s+\d*[.]\d*[+eE-]*\d*\s+\d*[.]\d*[+eE-]*\d*\s+\d*[.]\d*[+eE-]*\d*\s+\d*[.]\d*[+eE-]*\d*\s+\d*[.]\d*[+eE-]*\d*\s*\d*[.]?\d*[+eE-]*\d*\s*$') /usr/lib/python3/dist-packages/bioxtasraw/DENSS.py:473: SyntaxWarning: invalid escape sequence '\s' te_fit = re.compile('\s*Total\s+[Ee]stimate\s*:\s+\d*[.]\d+\s*\(?[A-Za-z\s]+\)?\s*$') /usr/lib/python3/dist-packages/bioxtasraw/DENSS.py:474: SyntaxWarning: invalid escape sequence '\d' te_num_fit = re.compile('\d*[.]\d+') /usr/lib/python3/dist-packages/bioxtasraw/DENSS.py:475: SyntaxWarning: invalid escape sequence '\s' te_quality_fit = re.compile('[Aa][A-Za-z\s]+\)?\s*$') /usr/lib/python3/dist-packages/bioxtasraw/DENSS.py:477: SyntaxWarning: invalid escape sequence '\s' p_rg_fit = re.compile('\s*Real\s+space\s*\:?\s*Rg\:?\s*\=?\s*\d*[.]\d+[+eE-]*\d*\s*\+-\s*\d*[.]\d+[+eE-]*\d*') /usr/lib/python3/dist-packages/bioxtasraw/DENSS.py:478: SyntaxWarning: invalid escape sequence '\s' q_rg_fit = re.compile('\s*Reciprocal\s+space\s*\:?\s*Rg\:?\s*\=?\s*\d*[.]\d+[+eE-]*\d*\s*') /usr/lib/python3/dist-packages/bioxtasraw/DENSS.py:480: SyntaxWarning: invalid escape sequence '\s' p_i0_fit = re.compile('\s*Real\s+space\s*\:?[A-Za-z0-9\s\.,+-=]*\(0\)\:?\s*\=?\s*\d*[.]\d+[+eE-]*\d*\s*\+-\s*\d*[.]\d+[+eE-]*\d*') /usr/lib/python3/dist-packages/bioxtasraw/DENSS.py:481: SyntaxWarning: invalid escape sequence '\s' q_i0_fit = re.compile('\s*Reciprocal\s+space\s*\:?[A-Za-z0-9\s\.,+-=]*\(0\)\:?\s*\=?\s*\d*[.]\d+[+eE-]*\d*\s*') /usr/lib/python3/dist-packages/bioxtasraw/DENSS.py:629: SyntaxWarning: invalid escape sequence '\s' iq_pattern = re.compile('\s*\d*[.]\d*[+eE-]*\d+\s+-?\d*[.]\d*[+eE-]*\d+\s+\d*[.]\d*[+eE-]*\d+\s*') /usr/lib/python3/dist-packages/bioxtasraw/DENSS.py:713: SyntaxWarning: invalid escape sequence '\s' iq_pattern = re.compile('\s*\d*[.]\d*[+eE-]*\d+\s+-?\d*[.]\d*[+eE-]*\d+\s+\d*[.]\d*[+eE-]*\d+\s*') /usr/lib/python3/dist-packages/bioxtasraw/DENSS.py:788: SyntaxWarning: invalid escape sequence '\s' iq_pattern = re.compile('\s*\d*[.]\d*[+eE-]*\d+\s+-?\d*[.]\d*[+eE-]*\d+\s+\d*[.]\d*[+eE-]*\d+\s*') /usr/lib/python3/dist-packages/bioxtasraw/RAWAnalysis.py:395: SyntaxWarning: invalid escape sequence '\l' self.subplotLabels = [('Guinier', '$q^2$', '$\ln(I(q))$', .1), /usr/lib/python3/dist-packages/bioxtasraw/RAWAnalysis.py:396: SyntaxWarning: invalid escape sequence '\D' ('Normalized Residual', '$q^2$', '$\Delta \ln (I(q))/\sigma (q)$', 0.1)] /usr/lib/python3/dist-packages/bioxtasraw/RAWAnalysis.py:398: SyntaxWarning: invalid escape sequence '\l' self.subplotLabels = [('Guinier', '$q^2$', '$\ln(I(q))$', .1), /usr/lib/python3/dist-packages/bioxtasraw/RAWAnalysis.py:399: SyntaxWarning: invalid escape sequence '\D' ('Residual', '$q^2$', '$\Delta \ln (I(q))$', 0.1)] /usr/lib/python3/dist-packages/bioxtasraw/RAWAnalysis.py:3780: SyntaxWarning: invalid escape sequence '\i' subplotLabels = [('Integrated Area of q*I(q)', 'q', '$\int q \cdot I(q) dq$', 'VC')] /usr/lib/python3/dist-packages/bioxtasraw/RAWAnalysis.py:4095: SyntaxWarning: invalid escape sequence '\D' '$\Delta I(q)/\sigma (q)$', 0.1)) /usr/lib/python3/dist-packages/bioxtasraw/RAWAnalysis.py:4097: SyntaxWarning: invalid escape sequence '\D' subplotLabels.append(('Residual', '$q$', '$\Delta I(q)$', 0.1)) /usr/lib/python3/dist-packages/bioxtasraw/RAWAnalysis.py:7839: SyntaxWarning: invalid escape sequence '\D' ax1.set_ylabel('$\Delta I(q)/\sigma (q)$') /usr/lib/python3/dist-packages/bioxtasraw/RAWAnalysis.py:7841: SyntaxWarning: invalid escape sequence '\D' ax1.set_ylabel('$\Delta I(q)$') /usr/lib/python3/dist-packages/bioxtasraw/RAWAnalysis.py:10339: SyntaxWarning: invalid escape sequence '\c' ax0.set_ylabel('$\chi^2$', fontsize='small') /usr/lib/python3/dist-packages/bioxtasraw/RAWAnalysis.py:10351: SyntaxWarning: invalid escape sequence '\m' ax2.set_ylabel('Support Volume ($\mathrm{\AA^{3}}$)', fontsize='small') /usr/lib/python3/dist-packages/bioxtasraw/RAWAnalysis.py:10461: SyntaxWarning: invalid escape sequence '\m' ax0.plot([resx],[0.5],'ro', label='Resolution = %.2f $\mathrm{\AA}$'%resn) /usr/lib/python3/dist-packages/bioxtasraw/RAWAnalysis.py:17041: SyntaxWarning: invalid escape sequence '\c' ('Mean Error Weighted $\chi^2$', 'Index', '$\chi^2$', 0.1), /usr/lib/python3/dist-packages/bioxtasraw/RAWAnalysis.py:17041: SyntaxWarning: invalid escape sequence '\c' ('Mean Error Weighted $\chi^2$', 'Index', '$\chi^2$', 0.1), /usr/lib/python3/dist-packages/bioxtasraw/RAWAnalysis.py:17087: SyntaxWarning: invalid escape sequence '\c' b = self.subplots['Mean Error Weighted $\chi^2$'] /usr/lib/python3/dist-packages/bioxtasraw/RAWAnalysis.py:17103: SyntaxWarning: invalid escape sequence '\c' b = self.subplots['Mean Error Weighted $\chi^2$'] /usr/lib/python3/dist-packages/bioxtasraw/RAWAnalysis.py:17168: SyntaxWarning: invalid escape sequence '\c' b = self.subplots['Mean Error Weighted $\chi^2$'] /usr/lib/python3/dist-packages/bioxtasraw/RAWAnalysis.py:17253: SyntaxWarning: invalid escape sequence '\c' b = self.subplots['Mean Error Weighted $\chi^2$'] /usr/lib/python3/dist-packages/bioxtasraw/RAWAnalysis.py:17344: SyntaxWarning: invalid escape sequence '\c' b = self.subplots['Mean Error Weighted $\chi^2$'] /usr/lib/python3/dist-packages/bioxtasraw/RAWAnalysis.py:17383: SyntaxWarning: invalid escape sequence '\c' self.subplots['Mean Error Weighted $\chi^2$'], /usr/lib/python3/dist-packages/bioxtasraw/RAWAnalysis.py:21329: SyntaxWarning: invalid escape sequence '\s' self.bottom_plot.set_ylabel('I/$\sigma$') /usr/lib/python3/dist-packages/bioxtasraw/RAWPlot.py:1424: SyntaxWarning: invalid escape sequence '\l' 'guinier' : ('Guinier', '$q^2$ [1/A^2]', '$\ln(I(q)$'), /usr/lib/python3/dist-packages/bioxtasraw/SASCalc.py:373: SyntaxWarning: invalid escape sequence '\i' """Calculates the volume of correlation as the ratio of i0 to $\int q*I dq$ /usr/lib/python3/dist-packages/bioxtasraw/SASCalc.py:1065: SyntaxWarning: invalid escape sequence '\s' dammif_re = 'ATSAS\s*\d+[.]\d+[.]\d*' /usr/lib/python3/dist-packages/bioxtasraw/SASFileIO.py:392: SyntaxWarning: invalid escape sequence '\d' timeMonitorPattern = re.compile('\d*-second\s[a-z]*\s[()A-Z,]*\s\d*\s\d*') /usr/lib/python3/dist-packages/bioxtasraw/SASFileIO.py:393: SyntaxWarning: invalid escape sequence '\s' closedShutterCountPattern = re.compile('closed\s\d*') /usr/lib/python3/dist-packages/bioxtasraw/SASFileIO.py:394: SyntaxWarning: invalid escape sequence '\s' datePattern = re.compile('#D\s.*\n') /usr/lib/python3/dist-packages/bioxtasraw/SASFileIO.py:1223: SyntaxWarning: invalid escape sequence '\s' start_match = '\s*' /usr/lib/python3/dist-packages/bioxtasraw/SASFileIO.py:1224: SyntaxWarning: invalid escape sequence '\s' end_match = '\s*$' /usr/lib/python3/dist-packages/bioxtasraw/SASFileIO.py:1225: SyntaxWarning: invalid escape sequence '\+' num_match = '[\+-]?\d+\.?\d*[+eE-]*\d*' /usr/lib/python3/dist-packages/bioxtasraw/SASFileIO.py:1226: SyntaxWarning: invalid escape sequence '\s' sep_match = '\s*[\s,]\s*' /usr/lib/python3/dist-packages/bioxtasraw/SASFileIO.py:1227: SyntaxWarning: invalid escape sequence '\s' alt_sep_match = '\s*[\s,]?\s*' /usr/lib/python3/dist-packages/bioxtasraw/SASFileIO.py:1760: SyntaxWarning: invalid escape sequence '\s' results_fit = re.compile('\s*Current\s+\d*[.]\d*[+eE-]*\d*\s+\d*[.]\d*[+eE-]*\d*\s+\d*[.]\d*[+eE-]*\d*\s+\d*[.]\d*[+eE-]*\d*\s+\d*[.]\d*[+eE-]*\d*\s+\d*[.]\d*[+eE-]*\d*\s*\d*[.]?\d*[+eE-]*\d*\s*$') /usr/lib/python3/dist-packages/bioxtasraw/SASFileIO.py:1762: SyntaxWarning: invalid escape sequence '\s' te_fit = re.compile('\s*Total\s+[Ee]stimate\s*:\s+\d*[.]\d+\s*\(?[A-Za-z\s]+\)?\s*$') /usr/lib/python3/dist-packages/bioxtasraw/SASFileIO.py:1763: SyntaxWarning: invalid escape sequence '\d' te_num_fit = re.compile('\d*[.]\d+') /usr/lib/python3/dist-packages/bioxtasraw/SASFileIO.py:1764: SyntaxWarning: invalid escape sequence '\s' te_quality_fit = re.compile('[Aa][A-Za-z\s]+\)?\s*$') /usr/lib/python3/dist-packages/bioxtasraw/SASFileIO.py:1766: SyntaxWarning: invalid escape sequence '\s' p_rg_fit = re.compile('\s*Real\s+space\s*\:?\s*Rg\:?\s*\=?\s*\d*[.]\d+[+eE-]*\d*\s*\+-\s*\d*[.]\d+[+eE-]*\d*') /usr/lib/python3/dist-packages/bioxtasraw/SASFileIO.py:1767: SyntaxWarning: invalid escape sequence '\s' q_rg_fit = re.compile('\s*Reciprocal\s+space\s*\:?\s*Rg\:?\s*\=?\s*\d*[.]\d+[+eE-]*\d*\s*') /usr/lib/python3/dist-packages/bioxtasraw/SASFileIO.py:1769: SyntaxWarning: invalid escape sequence '\s' p_i0_fit = re.compile('\s*Real\s+space\s*\:?[A-Za-z0-9\s\.,+-=]*\(0\)\:?\s*\=?\s*\d*[.]\d+[+eE-]*\d*\s*\+-\s*\d*[.]\d+[+eE-]*\d*') /usr/lib/python3/dist-packages/bioxtasraw/SASFileIO.py:1770: SyntaxWarning: invalid escape sequence '\s' q_i0_fit = re.compile('\s*Reciprocal\s+space\s*\:?[A-Za-z0-9\s\.,+-=]*\(0\)\:?\s*\=?\s*\d*[.]\d+[+eE-]*\d*\s*') /usr/lib/python3/dist-packages/bioxtasraw/SASFileIO.py:1772: SyntaxWarning: invalid escape sequence '\s' alpha_fit = re.compile('\s*Current\s+ALPHA\s*\:?\s*\=?\s*\d*[.]\d+[+eE-]*\d*\s*') /usr/lib/python3/dist-packages/bioxtasraw/SASFileIO.py:2659: SyntaxWarning: invalid escape sequence '\s' res_pattern = re.compile('\s*Ensemble\s*Resolution\s*=?\s*\d+\.?\d*\s*\+?-?\s*\d+\s*[a-zA-Z]*') /usr/lib/python3/dist-packages/bioxtasraw/SASFileIO.py:2730: SyntaxWarning: invalid escape sequence '\s' cluster_pattern = re.compile('\s*Cluster\s*\d') /usr/lib/python3/dist-packages/bioxtasraw/SASFileIO.py:2731: SyntaxWarning: invalid escape sequence '\s' distance_pattern = re.compile('\s*\d\s*\d\s*\d+[.]\d+\s*$') /usr/lib/python3/dist-packages/bioxtasraw/SASFileIO.py:3185: SyntaxWarning: invalid escape sequence '\s' param_pattern = re.compile('[a-zA-Z0-9_]*\s*[:]\s+.*') /usr/lib/python3/dist-packages/bioxtasraw/SASFileIO.py:3250: SyntaxWarning: invalid escape sequence '\s' param_pattern = re.compile('[a-zA-Z0-9_]*\s*[:]\s+.*')
