Source: snap Version: 2013-11-29-3 Severity: serious Justification: fails to build from source User: reproducible-bui...@lists.alioth.debian.org Usertags: ftbfs X-Debbugs-Cc: reproducible-bui...@lists.alioth.debian.org
Dear Maintainer, snap fails to build from source in unstable/amd64: [..] ************************************************************************************** ** Starting build ** ************************************************************************************** Package: snap Version: 2013-11-29-3 Build architecture: amd64 Date: Wed, 24 Aug 2016 08:45:19 +0100 Hostname: 1dec81a9ff7c Uname: Linux 1dec81a9ff7c 4.6.0-1-amd64 #1 SMP Debian 4.6.4-1 (2016-07-18) x86_64 GNU/Linux /etc/timezone: Europe/London ************************************************************************************** ** Installing build dependencies ** ************************************************************************************** dh_testdir dh_testroot dh_prep dh_testdir dh_testroot dh_install dh_installdocs dh_installchangelogs dh_compress dh_fixperms dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'snap-build-deps' in '../snap-build-deps_2013-11-29-3_all.deb'. The package has been created. Attention, the package has been created in the current directory, not in ".." as indicated by the message above! Selecting previously unselected package snap-build-deps. (Reading database ... 23244 files and directories currently installed.) Preparing to unpack snap-build-deps_2013-11-29-3_all.deb ... Unpacking snap-build-deps (2013-11-29-3) ... Reading package lists... Building dependency tree... Reading state information... Correcting dependencies... Done The following additional packages will be installed: help2man The following NEW packages will be installed: help2man 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 1 not fully installed or removed. Need to get 162 kB of archives. After this operation, 465 kB of additional disk space will be used. Get:1 http://httpredir.debian.org/debian sid/main amd64 help2man amd64 1.47.4 [162 kB] Fetched 162 kB in 0s (12.9 MB/s) Selecting previously unselected package help2man. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23248 files and directories currently installed.) Preparing to unpack .../help2man_1.47.4_amd64.deb ... Unpacking help2man (1.47.4) ... Setting up help2man (1.47.4) ... Processing triggers for man-db (2.7.5-1) ... Setting up snap-build-deps (2013-11-29-3) ... ************************************************************************************** ** Environment ** ************************************************************************************** PATH=/home/lamby/git/projects/dotfiles/dotfiles/..//bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin HOSTNAME=1dec81a9ff7c TERM=xterm PAGER=more DISPLAY=:0 DOCKER_IMAGE=lamby-debian-sid DEB_BUILD_OPTIONS=parallel=9 PIP_DOWNLOAD_CACHE=/home/lamby/.cache/pip HOME=/home/lamby LOGNAME=lamby SHLVL=1 PWD=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29 OLDPWD=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap GPG_TTY=/dev/console QUILT_PATCHES=debian/patches QUILT_NO_DIFF_INDEX=1 QUILT_REFRESH_ARGS=-p ab --no-timestamps --no-index DEBEMAIL=la...@debian.org DEBFULLNAME=Chris Lamb EDITOR=vim LESS=-cgiFx4M GPG_KEY=1E953E27D4311E58 BLASTER=A220 I5 D1 H5 P330 T6 _=/usr/bin/env ************************************************************************************** ** Building snap 2013-11-29-3 on amd64 ** ************************************************************************************** dpkg-buildpackage -rfakeroot -D -us -uc -b dpkg-buildpackage: info: source package snap dpkg-buildpackage: info: source version 2013-11-29-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sascha Steinbiss <sa...@debian.org> dpkg-source --before-build snap-2013-11-29 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' touch depend Zoe/depend dh_auto_clean make -j1 clean make[2]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' rm -f *.o snap fathom forge hmm-info exonpairs cd Zoe; make clean make[3]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe' rm -f *.o zoe-loop lexica seqedit seqstats twinkle make[3]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe' make[2]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' if [ -f depend.orig ] ; then mv depend.orig depend; fi if [ -f Zoe/depend.orig ] ; then mv Zoe/depend.orig Zoe/depend; fi make[1]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' dh_clean debian/rules build dh build dh_testdir dh_update_autotools_config dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' dh_auto_build CFLAGS="-g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-fPIE -pie -Wl,-z,relro -Wl,-z,now" make -j1 make[2]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' make gcc make[3]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' cd Zoe; make CFLAGS="-g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security"; make[4]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe' make gcc CFLAGS="-g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security" make[5]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe' make zoe-loop CFLAGS="-O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security" make[6]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe' cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoe-loop.o zoe-loop.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeAlignment.o zoeAlignment.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeCDS.o zoeCDS.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeCounter.o zoeCounter.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeDNA.o zoeDNA.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeDistribution.o zoeDistribution.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeDuration.o zoeDuration.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeFastaFile.o zoeFastaFile.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeFeature.o zoeFeature.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeFeatureFactory.o zoeFeatureFactory.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeFeatureTable.o zoeFeatureTable.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeHMM.o zoeHMM.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeIsochore.o zoeIsochore.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeMath.o zoeMath.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeModel.o zoeModel.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoePhasePref.o zoePhasePref.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeProtein.o zoeProtein.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeScanner.o zoeScanner.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeState.o zoeState.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeTools.o zoeTools.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeTransition.o zoeTransition.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeTrellis.o zoeTrellis.c cc -o zoe-loop -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 zoe-loop.o zoeAlignment.o zoeCDS.o zoeCounter.o zoeDNA.o zoeDistribution.o zoeDuration.o zoeFastaFile.o zoeFeature.o zoeFeatureFactory.o zoeFeatureTable.o zoeHMM.o zoeIsochore.o zoeMath.o zoeModel.o zoePhasePref.o zoeProtein.o zoeScanner.o zoeState.o zoeTools.o zoeTransition.o zoeTrellis.o -lm -fPIE -pie -Wl,-z,relro -Wl,-z,now make[6]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe' make[5]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe' make[4]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe' make snap CC="gcc" CFLAGS="-O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security" make[4]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' gcc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -IZoe -c -o snap.o snap.c gcc -o snap -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 snap.o Zoe/zoeAlignment.o Zoe/zoeCDS.o Zoe/zoeCounter.o Zoe/zoeDNA.o Zoe/zoeDistribution.o Zoe/zoeDuration.o Zoe/zoeFastaFile.o Zoe/zoeFeature.o Zoe/zoeFeatureFactory.o Zoe/zoeFeatureTable.o Zoe/zoeHMM.o Zoe/zoeIsochore.o Zoe/zoeMath.o Zoe/zoeModel.o Zoe/zoePhasePref.o Zoe/zoeProtein.o Zoe/zoeScanner.o Zoe/zoeState.o Zoe/zoeTools.o Zoe/zoeTransition.o Zoe/zoeTrellis.o -lm -fPIE -pie -Wl,-z,relro -Wl,-z,now make[4]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' make fathom CC="gcc" CFLAGS="-O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security" make[4]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' gcc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -IZoe -c -o fathom.o fathom.c gcc -o fathom -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 fathom.o Zoe/zoeAlignment.o Zoe/zoeCDS.o Zoe/zoeCounter.o Zoe/zoeDNA.o Zoe/zoeDistribution.o Zoe/zoeDuration.o Zoe/zoeFastaFile.o Zoe/zoeFeature.o Zoe/zoeFeatureFactory.o Zoe/zoeFeatureTable.o Zoe/zoeHMM.o Zoe/zoeIsochore.o Zoe/zoeMath.o Zoe/zoeModel.o Zoe/zoePhasePref.o Zoe/zoeProtein.o Zoe/zoeScanner.o Zoe/zoeState.o Zoe/zoeTools.o Zoe/zoeTransition.o Zoe/zoeTrellis.o -lm -fPIE -pie -Wl,-z,relro -Wl,-z,now make[4]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' make forge CC="gcc" CFLAGS="-O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security" make[4]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' gcc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -IZoe -c -o forge.o forge.c gcc -o forge -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 forge.o Zoe/zoeAlignment.o Zoe/zoeCDS.o Zoe/zoeCounter.o Zoe/zoeDNA.o Zoe/zoeDistribution.o Zoe/zoeDuration.o Zoe/zoeFastaFile.o Zoe/zoeFeature.o Zoe/zoeFeatureFactory.o Zoe/zoeFeatureTable.o Zoe/zoeHMM.o Zoe/zoeIsochore.o Zoe/zoeMath.o Zoe/zoeModel.o Zoe/zoePhasePref.o Zoe/zoeProtein.o Zoe/zoeScanner.o Zoe/zoeState.o Zoe/zoeTools.o Zoe/zoeTransition.o Zoe/zoeTrellis.o -lm -fPIE -pie -Wl,-z,relro -Wl,-z,now make[4]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' make hmm-info CC="gcc" CFLAGS="-O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security" make[4]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' gcc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -IZoe -c -o hmm-info.o hmm-info.c gcc -o hmm-info -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 hmm-info.o Zoe/zoeAlignment.o Zoe/zoeCDS.o Zoe/zoeCounter.o Zoe/zoeDNA.o Zoe/zoeDistribution.o Zoe/zoeDuration.o Zoe/zoeFastaFile.o Zoe/zoeFeature.o Zoe/zoeFeatureFactory.o Zoe/zoeFeatureTable.o Zoe/zoeHMM.o Zoe/zoeIsochore.o Zoe/zoeMath.o Zoe/zoeModel.o Zoe/zoePhasePref.o Zoe/zoeProtein.o Zoe/zoeScanner.o Zoe/zoeState.o Zoe/zoeTools.o Zoe/zoeTransition.o Zoe/zoeTrellis.o -lm -fPIE -pie -Wl,-z,relro -Wl,-z,now make[4]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' make exonpairs CC="gcc" CFLAGS="-O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security" make[4]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' gcc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -IZoe -c -o exonpairs.o exonpairs.c exonpairs.c: In function 'get_exons': exonpairs.c:86:7: error: this 'if' clause does not guard... [-Werror=misleading-indentation] if (exon->score < MIN_EINIT_SCORE) skip = 1; break; ^~ exonpairs.c:86:53: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if' if (exon->score < MIN_EINIT_SCORE) skip = 1; break; ^~~~~ exonpairs.c:87:7: error: this 'if' clause does not guard... [-Werror=misleading-indentation] if (length < MIN_EINIT_LENGTH) skip = 1; break; ^~ exonpairs.c:87:53: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if' if (length < MIN_EINIT_LENGTH) skip = 1; break; ^~~~~ exonpairs.c:89:7: error: this 'if' clause does not guard... [-Werror=misleading-indentation] if (exon->score < MIN_ETERM_SCORE) skip = 1; break; ^~ exonpairs.c:89:53: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if' if (exon->score < MIN_ETERM_SCORE) skip = 1; break; ^~~~~ exonpairs.c:90:7: error: this 'if' clause does not guard... [-Werror=misleading-indentation] if (length < MIN_ETERM_LENGTH) skip = 1; break; ^~ exonpairs.c:90:53: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if' if (length < MIN_ETERM_LENGTH) skip = 1; break; ^~~~~ exonpairs.c:92:7: error: this 'if' clause does not guard... [-Werror=misleading-indentation] if (exon->score < MIN_EXON_SCORE) skip = 1; break; ^~ exonpairs.c:92:53: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if' if (exon->score < MIN_EXON_SCORE) skip = 1; break; ^~~~~ exonpairs.c:93:7: error: this 'if' clause does not guard... [-Werror=misleading-indentation] if (length < MIN_EXON_LENGTH) skip = 1; break; ^~ exonpairs.c:93:53: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if' if (length < MIN_EXON_LENGTH) skip = 1; break; ^~~~~ cc1: all warnings being treated as errors Makefile:111: recipe for target 'exonpairs.o' failed make[4]: *** [exonpairs.o] Error 1 make[4]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' Makefile:98: recipe for target 'gcc' failed make[3]: *** [gcc] Error 2 make[3]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' Makefile:60: recipe for target 'default' failed make[2]: *** [default] Error 2 make[2]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' dh_auto_build: make -j1 returned exit code 2 debian/rules:30: recipe for target 'override_dh_auto_build' failed make[1]: *** [override_dh_auto_build] Error 2 make[1]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' debian/rules:16: recipe for target 'build' failed make: *** [build] Error 2 [..] The full build log is attached. Regards, -- ,''`. : :' : Chris Lamb `. `'` la...@debian.org / chris-lamb.co.uk `-
snap.2013-11-29-3.unstable.amd64.log.txt.gz
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