Your message dated Wed, 24 Aug 2016 10:54:03 +0000 with message-id <e1bcvop-0005ba...@franck.debian.org> and subject line Bug#835283: fixed in snap 2013-11-29-4 has caused the Debian Bug report #835283, regarding snap: FTBFS: exonpairs.c:86:7: error: this 'if' clause does not guard... [-Werror=misleading-indentation] to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 835283: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=835283 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: snap Version: 2013-11-29-3 Severity: serious Justification: fails to build from source User: reproducible-bui...@lists.alioth.debian.org Usertags: ftbfs X-Debbugs-Cc: reproducible-bui...@lists.alioth.debian.org Dear Maintainer, snap fails to build from source in unstable/amd64: [..] ************************************************************************************** ** Starting build ** ************************************************************************************** Package: snap Version: 2013-11-29-3 Build architecture: amd64 Date: Wed, 24 Aug 2016 08:45:19 +0100 Hostname: 1dec81a9ff7c Uname: Linux 1dec81a9ff7c 4.6.0-1-amd64 #1 SMP Debian 4.6.4-1 (2016-07-18) x86_64 GNU/Linux /etc/timezone: Europe/London ************************************************************************************** ** Installing build dependencies ** ************************************************************************************** dh_testdir dh_testroot dh_prep dh_testdir dh_testroot dh_install dh_installdocs dh_installchangelogs dh_compress dh_fixperms dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'snap-build-deps' in '../snap-build-deps_2013-11-29-3_all.deb'. The package has been created. Attention, the package has been created in the current directory, not in ".." as indicated by the message above! Selecting previously unselected package snap-build-deps. (Reading database ... 23244 files and directories currently installed.) Preparing to unpack snap-build-deps_2013-11-29-3_all.deb ... Unpacking snap-build-deps (2013-11-29-3) ... Reading package lists... Building dependency tree... Reading state information... Correcting dependencies... Done The following additional packages will be installed: help2man The following NEW packages will be installed: help2man 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 1 not fully installed or removed. Need to get 162 kB of archives. After this operation, 465 kB of additional disk space will be used. Get:1 http://httpredir.debian.org/debian sid/main amd64 help2man amd64 1.47.4 [162 kB] Fetched 162 kB in 0s (12.9 MB/s) Selecting previously unselected package help2man. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23248 files and directories currently installed.) Preparing to unpack .../help2man_1.47.4_amd64.deb ... Unpacking help2man (1.47.4) ... Setting up help2man (1.47.4) ... Processing triggers for man-db (2.7.5-1) ... Setting up snap-build-deps (2013-11-29-3) ... ************************************************************************************** ** Environment ** ************************************************************************************** PATH=/home/lamby/git/projects/dotfiles/dotfiles/..//bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin HOSTNAME=1dec81a9ff7c TERM=xterm PAGER=more DISPLAY=:0 DOCKER_IMAGE=lamby-debian-sid DEB_BUILD_OPTIONS=parallel=9 PIP_DOWNLOAD_CACHE=/home/lamby/.cache/pip HOME=/home/lamby LOGNAME=lamby SHLVL=1 PWD=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29 OLDPWD=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap GPG_TTY=/dev/console QUILT_PATCHES=debian/patches QUILT_NO_DIFF_INDEX=1 QUILT_REFRESH_ARGS=-p ab --no-timestamps --no-index DEBEMAIL=la...@debian.org DEBFULLNAME=Chris Lamb EDITOR=vim LESS=-cgiFx4M GPG_KEY=1E953E27D4311E58 BLASTER=A220 I5 D1 H5 P330 T6 _=/usr/bin/env ************************************************************************************** ** Building snap 2013-11-29-3 on amd64 ** ************************************************************************************** dpkg-buildpackage -rfakeroot -D -us -uc -b dpkg-buildpackage: info: source package snap dpkg-buildpackage: info: source version 2013-11-29-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sascha Steinbiss <sa...@debian.org> dpkg-source --before-build snap-2013-11-29 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' touch depend Zoe/depend dh_auto_clean make -j1 clean make[2]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' rm -f *.o snap fathom forge hmm-info exonpairs cd Zoe; make clean make[3]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe' rm -f *.o zoe-loop lexica seqedit seqstats twinkle make[3]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe' make[2]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' if [ -f depend.orig ] ; then mv depend.orig depend; fi if [ -f Zoe/depend.orig ] ; then mv Zoe/depend.orig Zoe/depend; fi make[1]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' dh_clean debian/rules build dh build dh_testdir dh_update_autotools_config dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' dh_auto_build CFLAGS="-g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-fPIE -pie -Wl,-z,relro -Wl,-z,now" make -j1 make[2]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' make gcc make[3]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' cd Zoe; make CFLAGS="-g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security"; make[4]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe' make gcc CFLAGS="-g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security" make[5]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe' make zoe-loop CFLAGS="-O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security" make[6]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe' cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoe-loop.o zoe-loop.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeAlignment.o zoeAlignment.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeCDS.o zoeCDS.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeCounter.o zoeCounter.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeDNA.o zoeDNA.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeDistribution.o zoeDistribution.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeDuration.o zoeDuration.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeFastaFile.o zoeFastaFile.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeFeature.o zoeFeature.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeFeatureFactory.o zoeFeatureFactory.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeFeatureTable.o zoeFeatureTable.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeHMM.o zoeHMM.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeIsochore.o zoeIsochore.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeMath.o zoeMath.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeModel.o zoeModel.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoePhasePref.o zoePhasePref.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeProtein.o zoeProtein.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeScanner.o zoeScanner.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeState.o zoeState.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeTools.o zoeTools.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeTransition.o zoeTransition.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeTrellis.o zoeTrellis.c cc -o zoe-loop -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 zoe-loop.o zoeAlignment.o zoeCDS.o zoeCounter.o zoeDNA.o zoeDistribution.o zoeDuration.o zoeFastaFile.o zoeFeature.o zoeFeatureFactory.o zoeFeatureTable.o zoeHMM.o zoeIsochore.o zoeMath.o zoeModel.o zoePhasePref.o zoeProtein.o zoeScanner.o zoeState.o zoeTools.o zoeTransition.o zoeTrellis.o -lm -fPIE -pie -Wl,-z,relro -Wl,-z,now make[6]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe' make[5]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe' make[4]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe' make snap CC="gcc" CFLAGS="-O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security" make[4]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' gcc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -IZoe -c -o snap.o snap.c gcc -o snap -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 snap.o Zoe/zoeAlignment.o Zoe/zoeCDS.o Zoe/zoeCounter.o Zoe/zoeDNA.o Zoe/zoeDistribution.o Zoe/zoeDuration.o Zoe/zoeFastaFile.o Zoe/zoeFeature.o Zoe/zoeFeatureFactory.o Zoe/zoeFeatureTable.o Zoe/zoeHMM.o Zoe/zoeIsochore.o Zoe/zoeMath.o Zoe/zoeModel.o Zoe/zoePhasePref.o Zoe/zoeProtein.o Zoe/zoeScanner.o Zoe/zoeState.o Zoe/zoeTools.o Zoe/zoeTransition.o Zoe/zoeTrellis.o -lm -fPIE -pie -Wl,-z,relro -Wl,-z,now make[4]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' make fathom CC="gcc" CFLAGS="-O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security" make[4]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' gcc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -IZoe -c -o fathom.o fathom.c gcc -o fathom -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 fathom.o Zoe/zoeAlignment.o Zoe/zoeCDS.o Zoe/zoeCounter.o Zoe/zoeDNA.o Zoe/zoeDistribution.o Zoe/zoeDuration.o Zoe/zoeFastaFile.o Zoe/zoeFeature.o Zoe/zoeFeatureFactory.o Zoe/zoeFeatureTable.o Zoe/zoeHMM.o Zoe/zoeIsochore.o Zoe/zoeMath.o Zoe/zoeModel.o Zoe/zoePhasePref.o Zoe/zoeProtein.o Zoe/zoeScanner.o Zoe/zoeState.o Zoe/zoeTools.o Zoe/zoeTransition.o Zoe/zoeTrellis.o -lm -fPIE -pie -Wl,-z,relro -Wl,-z,now make[4]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' make forge CC="gcc" CFLAGS="-O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security" make[4]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' gcc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -IZoe -c -o forge.o forge.c gcc -o forge -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 forge.o Zoe/zoeAlignment.o Zoe/zoeCDS.o Zoe/zoeCounter.o Zoe/zoeDNA.o Zoe/zoeDistribution.o Zoe/zoeDuration.o Zoe/zoeFastaFile.o Zoe/zoeFeature.o Zoe/zoeFeatureFactory.o Zoe/zoeFeatureTable.o Zoe/zoeHMM.o Zoe/zoeIsochore.o Zoe/zoeMath.o Zoe/zoeModel.o Zoe/zoePhasePref.o Zoe/zoeProtein.o Zoe/zoeScanner.o Zoe/zoeState.o Zoe/zoeTools.o Zoe/zoeTransition.o Zoe/zoeTrellis.o -lm -fPIE -pie -Wl,-z,relro -Wl,-z,now make[4]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' make hmm-info CC="gcc" CFLAGS="-O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security" make[4]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' gcc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -IZoe -c -o hmm-info.o hmm-info.c gcc -o hmm-info -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 hmm-info.o Zoe/zoeAlignment.o Zoe/zoeCDS.o Zoe/zoeCounter.o Zoe/zoeDNA.o Zoe/zoeDistribution.o Zoe/zoeDuration.o Zoe/zoeFastaFile.o Zoe/zoeFeature.o Zoe/zoeFeatureFactory.o Zoe/zoeFeatureTable.o Zoe/zoeHMM.o Zoe/zoeIsochore.o Zoe/zoeMath.o Zoe/zoeModel.o Zoe/zoePhasePref.o Zoe/zoeProtein.o Zoe/zoeScanner.o Zoe/zoeState.o Zoe/zoeTools.o Zoe/zoeTransition.o Zoe/zoeTrellis.o -lm -fPIE -pie -Wl,-z,relro -Wl,-z,now make[4]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' make exonpairs CC="gcc" CFLAGS="-O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security" make[4]: Entering directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' gcc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -IZoe -c -o exonpairs.o exonpairs.c exonpairs.c: In function 'get_exons': exonpairs.c:86:7: error: this 'if' clause does not guard... [-Werror=misleading-indentation] if (exon->score < MIN_EINIT_SCORE) skip = 1; break; ^~ exonpairs.c:86:53: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if' if (exon->score < MIN_EINIT_SCORE) skip = 1; break; ^~~~~ exonpairs.c:87:7: error: this 'if' clause does not guard... [-Werror=misleading-indentation] if (length < MIN_EINIT_LENGTH) skip = 1; break; ^~ exonpairs.c:87:53: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if' if (length < MIN_EINIT_LENGTH) skip = 1; break; ^~~~~ exonpairs.c:89:7: error: this 'if' clause does not guard... [-Werror=misleading-indentation] if (exon->score < MIN_ETERM_SCORE) skip = 1; break; ^~ exonpairs.c:89:53: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if' if (exon->score < MIN_ETERM_SCORE) skip = 1; break; ^~~~~ exonpairs.c:90:7: error: this 'if' clause does not guard... [-Werror=misleading-indentation] if (length < MIN_ETERM_LENGTH) skip = 1; break; ^~ exonpairs.c:90:53: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if' if (length < MIN_ETERM_LENGTH) skip = 1; break; ^~~~~ exonpairs.c:92:7: error: this 'if' clause does not guard... [-Werror=misleading-indentation] if (exon->score < MIN_EXON_SCORE) skip = 1; break; ^~ exonpairs.c:92:53: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if' if (exon->score < MIN_EXON_SCORE) skip = 1; break; ^~~~~ exonpairs.c:93:7: error: this 'if' clause does not guard... [-Werror=misleading-indentation] if (length < MIN_EXON_LENGTH) skip = 1; break; ^~ exonpairs.c:93:53: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if' if (length < MIN_EXON_LENGTH) skip = 1; break; ^~~~~ cc1: all warnings being treated as errors Makefile:111: recipe for target 'exonpairs.o' failed make[4]: *** [exonpairs.o] Error 1 make[4]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' Makefile:98: recipe for target 'gcc' failed make[3]: *** [gcc] Error 2 make[3]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' Makefile:60: recipe for target 'default' failed make[2]: *** [default] Error 2 make[2]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' dh_auto_build: make -j1 returned exit code 2 debian/rules:30: recipe for target 'override_dh_auto_build' failed make[1]: *** [override_dh_auto_build] Error 2 make[1]: Leaving directory '/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29' debian/rules:16: recipe for target 'build' failed make: *** [build] Error 2 [..] The full build log is attached. Regards, -- ,''`. : :' : Chris Lamb `. `'` la...@debian.org / chris-lamb.co.uk `-snap.2013-11-29-3.unstable.amd64.log.txt.gz
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--- Begin Message ---Source: snap Source-Version: 2013-11-29-4 We believe that the bug you reported is fixed in the latest version of snap, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 835...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated snap package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Wed, 24 Aug 2016 12:29:39 +0200 Source: snap Binary: snap Architecture: source amd64 Version: 2013-11-29-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: snap - location of genes from DNA sequence with hidden markov model Closes: 835283 Changes: snap (2013-11-29-4) unstable; urgency=medium . * itoa implementation had broken identation - use sprintf instead * add missing braces Closes: #835283 Checksums-Sha1: 7735bcfd6b02bc5a33c616e0706fb8205715c01a 2029 snap_2013-11-29-4.dsc 13a3e639dde7e854b4b89a3c31cc0a7d2db5490b 8496 snap_2013-11-29-4.debian.tar.xz b9675f2ca8d8d1c956d607495c44398954d60dd3 771784 snap-dbgsym_2013-11-29-4_amd64.deb 31add4df50cc660428d493a0344d5aa394557d3f 374754 snap_2013-11-29-4_amd64.deb Checksums-Sha256: 3967c990dd7b41a7110937a3e8b18bcc7fcfae975b40c2a51bf52c61d8b34de0 2029 snap_2013-11-29-4.dsc 75fb136e3c3f0b5bc4b73217baec6d0f38a7890ee55728304a994db690387976 8496 snap_2013-11-29-4.debian.tar.xz b43214d2f56747348aee828e12d4f9145109c25b44d0cee24242b66d518f68fa 771784 snap-dbgsym_2013-11-29-4_amd64.deb e68690e104e71c84e01a6988aaad220f901b40885be3ee94a76ea1fd1643811f 374754 snap_2013-11-29-4_amd64.deb Files: 0840a66a52dfa0edf8ac83062f32d0bf 2029 science optional snap_2013-11-29-4.dsc 301e5c66087759b7202e4a8a08d17a46 8496 science optional snap_2013-11-29-4.debian.tar.xz 164cee31b05c0a988b196f5205a77af1 771784 debug extra snap-dbgsym_2013-11-29-4_amd64.deb c9f2aded94ce95873ec1a4df55db9619 374754 science optional snap_2013-11-29-4_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJXvXdSAAoJEFeKBJTRxkbR3DgQAINO2hca7l46P40oxlNp0mRf nLZmOaE5FlY0xUtX2eP/liepBnNt13i79iXZg0alvLwfjMAIJlIkzXrL56AZVVRW JKlP6cPcVTQ3OrwymO/9oBioM/qSahogtrXONfXnTYZmTRnnZnzvNIZuDr2bnMh0 B2hFJCGCDh+8NwErqBF77HbsQ6zk03Ii34CuPySSS+w+1KtUkHDHVBSwwXw7wd6k XBHbOKpYd3yekB22Vy9gsyJCPpLuQ2Jtcm6TnBQOAymunE53TQU3rgmziEHATov6 jWOXwIb4+2Lo1lWf7Ed0UJWd8do6PpmyBZ2blbVcxQuwUNVDP0FlMg9LWjEfOkls vZ4mCqKhY35rUSII2ZtMd6spNEyB51L0PcqIkZ6kCoI4qqfZUtG1tkLUJqda8Bxz PRY3oEzmed3SEosu7Qlensw4QtSAFA1JMigQm6dDMcqPy74MNzaCXMrvDKxFfTrN Y1Yanif4VLggO7zqEXNS68hK3GrZRqxVLtgHTgWLcBY97oTubXqAKYPNAt2O7cri q9GMcBEB4AtVlUNgAj2/0ulNYp5iSztJdzd3RH8EEuLuRmFwBq3xcfPRloN2AtNz 1dFoVUaRNEd/rFxcUbXhfzEeGz/xLX3WUmB3vLJ5vM23SSZDboW/vFiuqRe5ebvG 1PPWSFww4o+eiJOFeB1c =8uuM -----END PGP SIGNATURE-----
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