Your message dated Wed, 24 Aug 2016 10:54:03 +0000
with message-id <e1bcvop-0005ba...@franck.debian.org>
and subject line Bug#835283: fixed in snap 2013-11-29-4
has caused the Debian Bug report #835283,
regarding snap: FTBFS: exonpairs.c:86:7: error: this 'if' clause does not
guard... [-Werror=misleading-indentation]
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
835283: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=835283
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: snap
Version: 2013-11-29-3
Severity: serious
Justification: fails to build from source
User: reproducible-bui...@lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-bui...@lists.alioth.debian.org
Dear Maintainer,
snap fails to build from source in unstable/amd64:
[..]
**************************************************************************************
** Starting build
**
**************************************************************************************
Package: snap
Version: 2013-11-29-3
Build architecture: amd64
Date: Wed, 24 Aug 2016 08:45:19 +0100
Hostname: 1dec81a9ff7c
Uname: Linux 1dec81a9ff7c 4.6.0-1-amd64 #1 SMP Debian 4.6.4-1
(2016-07-18) x86_64 GNU/Linux
/etc/timezone: Europe/London
**************************************************************************************
** Installing build dependencies
**
**************************************************************************************
dh_testdir
dh_testroot
dh_prep
dh_testdir
dh_testroot
dh_install
dh_installdocs
dh_installchangelogs
dh_compress
dh_fixperms
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'snap-build-deps' in
'../snap-build-deps_2013-11-29-3_all.deb'.
The package has been created.
Attention, the package has been created in the current directory,
not in ".." as indicated by the message above!
Selecting previously unselected package snap-build-deps.
(Reading database ... 23244 files and directories currently installed.)
Preparing to unpack snap-build-deps_2013-11-29-3_all.deb ...
Unpacking snap-build-deps (2013-11-29-3) ...
Reading package lists...
Building dependency tree...
Reading state information...
Correcting dependencies... Done
The following additional packages will be installed:
help2man
The following NEW packages will be installed:
help2man
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
1 not fully installed or removed.
Need to get 162 kB of archives.
After this operation, 465 kB of additional disk space will be used.
Get:1 http://httpredir.debian.org/debian sid/main amd64 help2man amd64 1.47.4
[162 kB]
Fetched 162 kB in 0s (12.9 MB/s)
Selecting previously unselected package help2man.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 23248 files and directories currently installed.)
Preparing to unpack .../help2man_1.47.4_amd64.deb ...
Unpacking help2man (1.47.4) ...
Setting up help2man (1.47.4) ...
Processing triggers for man-db (2.7.5-1) ...
Setting up snap-build-deps (2013-11-29-3) ...
**************************************************************************************
** Environment
**
**************************************************************************************
PATH=/home/lamby/git/projects/dotfiles/dotfiles/..//bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
HOSTNAME=1dec81a9ff7c
TERM=xterm
PAGER=more
DISPLAY=:0
DOCKER_IMAGE=lamby-debian-sid
DEB_BUILD_OPTIONS=parallel=9
PIP_DOWNLOAD_CACHE=/home/lamby/.cache/pip
HOME=/home/lamby
LOGNAME=lamby
SHLVL=1
PWD=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29
OLDPWD=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap
GPG_TTY=/dev/console
QUILT_PATCHES=debian/patches
QUILT_NO_DIFF_INDEX=1
QUILT_REFRESH_ARGS=-p ab --no-timestamps --no-index
DEBEMAIL=la...@debian.org
DEBFULLNAME=Chris Lamb
EDITOR=vim
LESS=-cgiFx4M
GPG_KEY=1E953E27D4311E58
BLASTER=A220 I5 D1 H5 P330 T6
_=/usr/bin/env
**************************************************************************************
** Building snap 2013-11-29-3 on amd64
**
**************************************************************************************
dpkg-buildpackage -rfakeroot -D -us -uc -b
dpkg-buildpackage: info: source package snap
dpkg-buildpackage: info: source version 2013-11-29-3
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Sascha Steinbiss <sa...@debian.org>
dpkg-source --before-build snap-2013-11-29
dpkg-buildpackage: info: host architecture amd64
fakeroot debian/rules clean
dh clean
dh_testdir
debian/rules override_dh_auto_clean
make[1]: Entering directory
'/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
touch depend Zoe/depend
dh_auto_clean
make -j1 clean
make[2]: Entering directory
'/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
rm -f *.o snap fathom forge hmm-info exonpairs
cd Zoe; make clean
make[3]: Entering directory
'/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe'
rm -f *.o zoe-loop lexica seqedit seqstats twinkle
make[3]: Leaving directory
'/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe'
make[2]: Leaving directory
'/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
if [ -f depend.orig ] ; then mv depend.orig depend; fi
if [ -f Zoe/depend.orig ] ; then mv Zoe/depend.orig Zoe/depend; fi
make[1]: Leaving directory
'/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
dh_clean
debian/rules build
dh build
dh_testdir
dh_update_autotools_config
dh_auto_configure
debian/rules override_dh_auto_build
make[1]: Entering directory
'/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
dh_auto_build CFLAGS="-g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security"
LDFLAGS="-fPIE -pie -Wl,-z,relro -Wl,-z,now"
make -j1
make[2]: Entering directory
'/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
make gcc
make[3]: Entering directory
'/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
cd Zoe; make CFLAGS="-g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security";
make[4]: Entering directory
'/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe'
make gcc CFLAGS="-g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security"
make[5]: Entering directory
'/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe'
make zoe-loop CFLAGS="-O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security"
make[6]: Entering directory
'/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe'
cc -O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o zoe-loop.o zoe-loop.c
cc -O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o zoeAlignment.o zoeAlignment.c
cc -O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o zoeCDS.o zoeCDS.c
cc -O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o zoeCounter.o zoeCounter.c
cc -O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o zoeDNA.o zoeDNA.c
cc -O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o zoeDistribution.o zoeDistribution.c
cc -O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o zoeDuration.o zoeDuration.c
cc -O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o zoeFastaFile.o zoeFastaFile.c
cc -O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o zoeFeature.o zoeFeature.c
cc -O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o zoeFeatureFactory.o zoeFeatureFactory.c
cc -O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o zoeFeatureTable.o zoeFeatureTable.c
cc -O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o zoeHMM.o zoeHMM.c
cc -O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o zoeIsochore.o zoeIsochore.c
cc -O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o zoeMath.o zoeMath.c
cc -O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o zoeModel.o zoeModel.c
cc -O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o zoePhasePref.o zoePhasePref.c
cc -O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o zoeProtein.o zoeProtein.c
cc -O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o zoeScanner.o zoeScanner.c
cc -O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o zoeState.o zoeState.c
cc -O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o zoeTools.o zoeTools.c
cc -O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o zoeTransition.o zoeTransition.c
cc -O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -c -o zoeTrellis.o zoeTrellis.c
cc -o zoe-loop -O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 zoe-loop.o zoeAlignment.o zoeCDS.o zoeCounter.o zoeDNA.o
zoeDistribution.o zoeDuration.o zoeFastaFile.o zoeFeature.o zoeFeatureFactory.o
zoeFeatureTable.o zoeHMM.o zoeIsochore.o zoeMath.o zoeModel.o zoePhasePref.o
zoeProtein.o zoeScanner.o zoeState.o zoeTools.o zoeTransition.o zoeTrellis.o
-lm -fPIE -pie -Wl,-z,relro -Wl,-z,now
make[6]: Leaving directory
'/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe'
make[5]: Leaving directory
'/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe'
make[4]: Leaving directory
'/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29/Zoe'
make snap CC="gcc" CFLAGS="-O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security"
make[4]: Entering directory
'/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
gcc -O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -IZoe -c -o snap.o snap.c
gcc -o snap -O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 snap.o Zoe/zoeAlignment.o Zoe/zoeCDS.o Zoe/zoeCounter.o
Zoe/zoeDNA.o Zoe/zoeDistribution.o Zoe/zoeDuration.o Zoe/zoeFastaFile.o
Zoe/zoeFeature.o Zoe/zoeFeatureFactory.o Zoe/zoeFeatureTable.o Zoe/zoeHMM.o
Zoe/zoeIsochore.o Zoe/zoeMath.o Zoe/zoeModel.o Zoe/zoePhasePref.o
Zoe/zoeProtein.o Zoe/zoeScanner.o Zoe/zoeState.o Zoe/zoeTools.o
Zoe/zoeTransition.o Zoe/zoeTrellis.o -lm -fPIE -pie -Wl,-z,relro -Wl,-z,now
make[4]: Leaving directory
'/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
make fathom CC="gcc" CFLAGS="-O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security"
make[4]: Entering directory
'/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
gcc -O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -IZoe -c -o fathom.o fathom.c
gcc -o fathom -O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 fathom.o Zoe/zoeAlignment.o Zoe/zoeCDS.o Zoe/zoeCounter.o
Zoe/zoeDNA.o Zoe/zoeDistribution.o Zoe/zoeDuration.o Zoe/zoeFastaFile.o
Zoe/zoeFeature.o Zoe/zoeFeatureFactory.o Zoe/zoeFeatureTable.o Zoe/zoeHMM.o
Zoe/zoeIsochore.o Zoe/zoeMath.o Zoe/zoeModel.o Zoe/zoePhasePref.o
Zoe/zoeProtein.o Zoe/zoeScanner.o Zoe/zoeState.o Zoe/zoeTools.o
Zoe/zoeTransition.o Zoe/zoeTrellis.o -lm -fPIE -pie -Wl,-z,relro -Wl,-z,now
make[4]: Leaving directory
'/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
make forge CC="gcc" CFLAGS="-O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security"
make[4]: Entering directory
'/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
gcc -O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -IZoe -c -o forge.o forge.c
gcc -o forge -O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 forge.o Zoe/zoeAlignment.o Zoe/zoeCDS.o Zoe/zoeCounter.o
Zoe/zoeDNA.o Zoe/zoeDistribution.o Zoe/zoeDuration.o Zoe/zoeFastaFile.o
Zoe/zoeFeature.o Zoe/zoeFeatureFactory.o Zoe/zoeFeatureTable.o Zoe/zoeHMM.o
Zoe/zoeIsochore.o Zoe/zoeMath.o Zoe/zoeModel.o Zoe/zoePhasePref.o
Zoe/zoeProtein.o Zoe/zoeScanner.o Zoe/zoeState.o Zoe/zoeTools.o
Zoe/zoeTransition.o Zoe/zoeTrellis.o -lm -fPIE -pie -Wl,-z,relro -Wl,-z,now
make[4]: Leaving directory
'/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
make hmm-info CC="gcc" CFLAGS="-O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security"
make[4]: Entering directory
'/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
gcc -O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -IZoe -c -o hmm-info.o hmm-info.c
gcc -o hmm-info -O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 hmm-info.o Zoe/zoeAlignment.o Zoe/zoeCDS.o Zoe/zoeCounter.o
Zoe/zoeDNA.o Zoe/zoeDistribution.o Zoe/zoeDuration.o Zoe/zoeFastaFile.o
Zoe/zoeFeature.o Zoe/zoeFeatureFactory.o Zoe/zoeFeatureTable.o Zoe/zoeHMM.o
Zoe/zoeIsochore.o Zoe/zoeMath.o Zoe/zoeModel.o Zoe/zoePhasePref.o
Zoe/zoeProtein.o Zoe/zoeScanner.o Zoe/zoeState.o Zoe/zoeTools.o
Zoe/zoeTransition.o Zoe/zoeTrellis.o -lm -fPIE -pie -Wl,-z,relro -Wl,-z,now
make[4]: Leaving directory
'/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
make exonpairs CC="gcc" CFLAGS="-O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security"
make[4]: Entering directory
'/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
gcc -O2 -Wall -Werror -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29=.
-fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -IZoe -c -o exonpairs.o exonpairs.c
exonpairs.c: In function 'get_exons':
exonpairs.c:86:7: error: this 'if' clause does not guard...
[-Werror=misleading-indentation]
if (exon->score < MIN_EINIT_SCORE) skip = 1; break;
^~
exonpairs.c:86:53: note: ...this statement, but the latter is misleadingly
indented as if it is guarded by the 'if'
if (exon->score < MIN_EINIT_SCORE) skip = 1; break;
^~~~~
exonpairs.c:87:7: error: this 'if' clause does not guard...
[-Werror=misleading-indentation]
if (length < MIN_EINIT_LENGTH) skip = 1; break;
^~
exonpairs.c:87:53: note: ...this statement, but the latter is misleadingly
indented as if it is guarded by the 'if'
if (length < MIN_EINIT_LENGTH) skip = 1; break;
^~~~~
exonpairs.c:89:7: error: this 'if' clause does not guard...
[-Werror=misleading-indentation]
if (exon->score < MIN_ETERM_SCORE) skip = 1; break;
^~
exonpairs.c:89:53: note: ...this statement, but the latter is misleadingly
indented as if it is guarded by the 'if'
if (exon->score < MIN_ETERM_SCORE) skip = 1; break;
^~~~~
exonpairs.c:90:7: error: this 'if' clause does not guard...
[-Werror=misleading-indentation]
if (length < MIN_ETERM_LENGTH) skip = 1; break;
^~
exonpairs.c:90:53: note: ...this statement, but the latter is misleadingly
indented as if it is guarded by the 'if'
if (length < MIN_ETERM_LENGTH) skip = 1; break;
^~~~~
exonpairs.c:92:7: error: this 'if' clause does not guard...
[-Werror=misleading-indentation]
if (exon->score < MIN_EXON_SCORE) skip = 1; break;
^~
exonpairs.c:92:53: note: ...this statement, but the latter is misleadingly
indented as if it is guarded by the 'if'
if (exon->score < MIN_EXON_SCORE) skip = 1; break;
^~~~~
exonpairs.c:93:7: error: this 'if' clause does not guard...
[-Werror=misleading-indentation]
if (length < MIN_EXON_LENGTH) skip = 1; break;
^~
exonpairs.c:93:53: note: ...this statement, but the latter is misleadingly
indented as if it is guarded by the 'if'
if (length < MIN_EXON_LENGTH) skip = 1; break;
^~~~~
cc1: all warnings being treated as errors
Makefile:111: recipe for target 'exonpairs.o' failed
make[4]: *** [exonpairs.o] Error 1
make[4]: Leaving directory
'/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
Makefile:98: recipe for target 'gcc' failed
make[3]: *** [gcc] Error 2
make[3]: Leaving directory
'/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
Makefile:60: recipe for target 'default' failed
make[2]: *** [default] Error 2
make[2]: Leaving directory
'/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
dh_auto_build: make -j1 returned exit code 2
debian/rules:30: recipe for target 'override_dh_auto_build' failed
make[1]: *** [override_dh_auto_build] Error 2
make[1]: Leaving directory
'/home/lamby/temp/cdt.20160824084517.zrdWVlXIYW.db.snap/snap-2013-11-29'
debian/rules:16: recipe for target 'build' failed
make: *** [build] Error 2
[..]
The full build log is attached.
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` la...@debian.org / chris-lamb.co.uk
`-
snap.2013-11-29-3.unstable.amd64.log.txt.gz
Description: Binary data
--- End Message ---
--- Begin Message ---
Source: snap
Source-Version: 2013-11-29-4
We believe that the bug you reported is fixed in the latest version of
snap, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 835...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated snap package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 24 Aug 2016 12:29:39 +0200
Source: snap
Binary: snap
Architecture: source amd64
Version: 2013-11-29-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
snap - location of genes from DNA sequence with hidden markov model
Closes: 835283
Changes:
snap (2013-11-29-4) unstable; urgency=medium
.
* itoa implementation had broken identation - use sprintf instead
* add missing braces
Closes: #835283
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Files:
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