> > > > ../progs/scramble ./data/c1#bounds.sam test.out/c1#bounds.sam > > > > ../progs/scramble -r ./data/c1.fa ./data/c1#bounds.sam > > > > test.out/c1#bounds.full.cram > > > > ../progs/scramble ./data/c1#bounds.sam > test.out/tmp.sam > > > > ../progs/scramble test.out/c1#bounds.full.cram > > > > > test.out/c1#bounds.full.sam > > > > ../progs/scramble -O bam test.out/c1#bounds.full.cram > > > > > test.out/c1#bounds.full.bam > > > > ../progs/scramble test.out/c1#bounds.full.bam test.out/tmp.sam > > > > Invalid CRC in Deflate stream: 6614764d vs 00006614 > > > > Failed to open file test.out/c1#bounds.full.bam > > > > FAIL scram.test (exit status: 1)
Upstream commit d4591b5 fixes the CRC bugs (and some other big-endian ones revealed after the CRC issue was fixed). The other bugs reported appear to be multi-threading related and will be dealt with in separate commits. James -- James Bonfield (j...@sanger.ac.uk) The Sanger Institute, Hinxton, Cambs, CB10 1SA -- The Wellcome Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE.