Your message dated Fri, 07 Dec 2018 07:53:00 +0000 with message-id <e1gvaww-000feq...@fasolo.debian.org> and subject line Bug#915450: fixed in staden-io-lib 1.14.11-4 has caused the Debian Bug report #915450, regarding staden-io-lib FTBFS on big endian: test failures to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 915450: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=915450 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: staden-io-lib Version: 1.14.11-2 Severity: serious Tags: ftbfs https://buildd.debian.org/status/package.php?p=staden-io-lib&suite=sid ... FAIL: scram =========== Loading ce.fa Generating ce#sorted.sam Generating ce#unsorted.sam === testing ./data/c1#bounds.sam === ./scram.test: 27: [: ./data/c1#bounds.sam: unexpected operator ../progs/scramble ./data/c1#bounds.sam test.out/c1#bounds.sam ../progs/scramble -r ./data/c1.fa ./data/c1#bounds.sam test.out/c1#bounds.full.cram ../progs/scramble ./data/c1#bounds.sam > test.out/tmp.sam ../progs/scramble test.out/c1#bounds.full.cram > test.out/c1#bounds.full.sam ../progs/scramble -O bam test.out/c1#bounds.full.cram > test.out/c1#bounds.full.bam ../progs/scramble test.out/c1#bounds.full.bam test.out/tmp.sam Invalid CRC in Deflate stream: 6614764d vs 00006614 Failed to open file test.out/c1#bounds.full.bam FAIL scram.test (exit status: 1) FAIL: scram_mt ============== === testing ./data/c1#bounds.sam === ./scram.test: 27: [: ./data/c1#bounds.sam: unexpected operator ../progs/scramble -t4 ./data/c1#bounds.sam test.out/c1#bounds.sam ../progs/scramble -t4 -r ./data/c1.fa ./data/c1#bounds.sam test.out/c1#bounds.full.cram ../progs/scramble -t4 ./data/c1#bounds.sam > test.out/tmp.sam ../progs/scramble -t4 test.out/c1#bounds.full.cram > test.out/c1#bounds.full.sam ../progs/scramble -t4 -O bam test.out/c1#bounds.full.cram > test.out/c1#bounds.full.bam ../progs/scramble -t4 test.out/c1#bounds.full.bam test.out/tmp.sam Invalid CRC in Deflate stream: 46b10f7a vs 000046b1 Failed to open file test.out/c1#bounds.full.bam FAIL scram_mt.test (exit status: 1) ============================================================================ Testsuite summary for io_lib 1.14.11 ============================================================================ # TOTAL: 9 # PASS: 7 # SKIP: 0 # XFAIL: 0 # FAIL: 2 # XPASS: 0 # ERROR: 0 ============================================================================ See tests/test-suite.log ============================================================================ make[4]: *** [Makefile:716: test-suite.log] Error 1
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--- Begin Message ---Source: staden-io-lib Source-Version: 1.14.11-4 We believe that the bug you reported is fixed in the latest version of staden-io-lib, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 915...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated staden-io-lib package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Fri, 07 Dec 2018 07:56:28 +0100 Source: staden-io-lib Binary: staden-io-lib-utils libstaden-read-dev libstaden-read13 staden-io-lib-examples Architecture: source Version: 1.14.11-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: libstaden-read-dev - development files for libstaden-read libstaden-read13 - Staden library for reading and writing DNA sequencing results staden-io-lib-examples - programs for manipulating DNA sequencing files (usage examples) staden-io-lib-utils - programs for manipulating DNA sequencing files Closes: 915450 915459 915460 Changes: staden-io-lib (1.14.11-4) unstable; urgency=medium . * Apply three patches from upstream to fix bugs on several architectures (thanks a lot for the support by James Bonfield) Closes: #915450, #915459, #915460 Checksums-Sha1: a20c095c798ab7a74ef51e63cb96375fb0aa80dc 2432 staden-io-lib_1.14.11-4.dsc 0fcd51b002e8ef2b34f7f73c1e15d24f5d51239d 12428 staden-io-lib_1.14.11-4.debian.tar.xz Checksums-Sha256: 9be9bd60567f212bfb7ccd7081a79457878cb8c96badb6962ad39c5ea68fd9ec 2432 staden-io-lib_1.14.11-4.dsc 0ff56a1e1c923ef22f3af0ed995c94e244e6e454bf5e8c9748cb9c36b3540afe 12428 staden-io-lib_1.14.11-4.debian.tar.xz Files: c94734e858e29dd5f4249b7482707d74 2432 science optional staden-io-lib_1.14.11-4.dsc 139484a13e56736c63dfd632123b2e37 12428 science optional staden-io-lib_1.14.11-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlwKHtYRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGbrQ//a4hTxMEZmFKbueL3leQfYnQCSO7QHM2K NORw68F62CcMH0t7f+YvIYWpZI2AoqNs87HMDqzEerIjlAceXmwKaFGezQFnlPna VsxIh6qs+gWXe/gJURTaxT/Wgx3eNxItmDXJ3PT3oHZ39IrFMTgsYu+AFyCtH3x0 MlRaU6JLiVYjQG8jXShEaB6UoSgOnvD43lvjojSGrCjQ8H+jDup73yVyOpCI1INI qsYGoxWon7T7AZZ9tW6AUKpTxHMsl/ROTfdLaLouVDyMsM7uK5sGN4WAiR0Tk2Vh Gd3lPZ+bliq6DB+z8xdQMqA90r3+iaCv9H6To0EgbxKaaaRzSLH3jz8MwgnxVmyS zxZSbOMFl7ivJXP/Udhx+vSs45qWzH6o0pvZW7oxIZkmxDs404PvZZ+FSVxAjcIr bMRsUS8Hy5WXp5sulla4AQ+tlNk6AUp/OIoSoOuldrA89Wtmh1tk11i94TlCjKQd PNG1AQwEoJGXI9rARPYbvOjLv9Tm3KHaBy7IVPqhIYOFIZLNN0rCRC9hb4zwyjQF +fa2Tgm0L/CJ8R6HauTmnXHtXojTkstp3WMTSPf8JCT5mH10CsyQVqE3e+WbsS0R jTFVrvcYB9qHk86upJ7ldZ/CpNnN599W8tOnJSc7cXH/1z1aiOaDTFWZyrIzspYc gKed5zc4KSY= =XcAF -----END PGP SIGNATURE-----
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