Source: pplacer Version: 1.1~alpha19-3 Severity: serious Justification: FTBFS on amd64 Tags: bullseye sid ftbfs Usertags: ftbfs-20201125 ftbfs-bullseye
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > make[3]: Entering directory '/<<PKGBUILDDIR>>' > ocamlbuild pplacer.native > /usr/bin/ocamlopt.opt unix.cmxa -I /usr/lib/ocaml/ocamlbuild > /usr/lib/ocaml/ocamlbuild/ocamlbuildlib.cmxa myocamlbuild.ml > /usr/lib/ocaml/ocamlbuild/ocamlbuild.cmx -o myocamlbuild > /bin/sh: 1: git: not found > File "_tags", line 8, characters 154-161: > Warning: the tag "pkg_str" is not used in any flag or dependency declaration, > so it will have no effect; it may be a typo. Otherwise you can use > `mark_tag_used` in your myocamlbuild.ml to disable this warning. > File "_tags", line 8, characters 112-124: > Warning: the tag "pkg_bigarray" is not used in any flag or dependency > declaration, so it will have no effect; it may be a typo. Otherwise you can > use `mark_tag_used` in your myocamlbuild.ml to disable this warning. > File "_tags", line 8, characters 102-110: > Warning: the tag "pkg_unix" is not used in any flag or dependency > declaration, so it will have no effect; it may be a typo. Otherwise you can > use `mark_tag_used` in your myocamlbuild.ml to disable this warning. > ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC > -c cdd_src/cddcore.c > mv cddcore.o cdd_src/cddcore.o > ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC > -c cdd_src/cddio.c > mv cddio.o cdd_src/cddio.o > ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC > -c cdd_src/cddlib.c > + ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC > -c cdd_src/cddlib.c > cdd_src/cddlib.c: In function ‘dd_DDMain’: > cdd_src/cddlib.c:116:7: warning: this ‘for’ clause does not guard... > [-Wmisleading-indentation] > 116 | for (itemp=1; cone->OrderVector[itemp]!=hh; itemp++); > | ^~~ > cdd_src/cddlib.c:117:9: note: ...this statement, but the latter is > misleadingly indented as if it were guarded by the ‘for’ > 117 | otemp=cone->OrderVector[cone->Iteration]; > | ^~~~~ > mv cddlib.o cdd_src/cddlib.o > ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC > -c cdd_src/cddlp.c > mv cddlp.o cdd_src/cddlp.o > ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC > -c cdd_src/cddmp.c > mv cddmp.o cdd_src/cddmp.o > ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC > -c cdd_src/cddproj.c > mv cddproj.o cdd_src/cddproj.o > ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC > -c cdd_src/setoper.c > mv setoper.o cdd_src/setoper.o > ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC > -c cdd_src/pplacer_cdd.c > mv pplacer_cdd.o cdd_src/pplacer_cdd.o > ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC > -c cdd_src/caml_cdd.c > mv caml_cdd.o cdd_src/caml_cdd.o > ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC > -c pam_src/pam.c > mv pam.o pam_src/pam.o > ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC > -c pam_src/caml_pam.c > + ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC > -c pam_src/caml_pam.c > In file included from /usr/lib/ocaml/caml/bigarray.h:23, > from pam_src/caml_pam.c:2: > pam_src/caml_pam.c: In function ‘caml_pam’: > /usr/lib/ocaml/caml/mlvalues.h:265:23: warning: initialization discards > ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] > 265 | #define String_val(x) ((const char *) Bp_val(x)) > | ^ > pam_src/caml_pam.c:18:16: note: in expansion of macro ‘String_val’ > 18 | char *keep = String_val(keep_value); > | ^~~~~~~~~~ > mv caml_pam.o pam_src/caml_pam.o > ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC > -c pplacer_src/linear_c.c > mv linear_c.o pplacer_src/linear_c.o > ocamlfind ocamlc -ccopt -Wall -ccopt -funroll-loops -ccopt -O3 -ccopt -fPIC > -c pplacer_src/unix_support.c > mv unix_support.o pplacer_src/unix_support.o > /usr/bin/ocamlmklib.opt -o cdd_src/cdd cdd_src/cddcore.o cdd_src/cddio.o > cdd_src/cddlib.o cdd_src/cddlp.o cdd_src/cddmp.o cdd_src/cddproj.o > cdd_src/setoper.o cdd_src/pplacer_cdd.o cdd_src/caml_cdd.o > /usr/bin/ocamlmklib.opt -o pam_src/pplacer_pam pam_src/pam.o > pam_src/caml_pam.o > /usr/bin/ocamlmklib.opt -o pplacer_src/pplacercside pplacer_src/linear_c.o > pplacer_src/unix_support.o > ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl > -package sqlite3 -package zip -package mcl -modules pplacer_src/pplacer.ml > > pplacer_src/pplacer.ml.depends > ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl > -package sqlite3 -package zip -package mcl -modules pplacer_src/check.ml > > pplacer_src/check.ml.depends > ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl > -package sqlite3 -package zip -package mcl -modules common_src/ppatteries.ml > > common_src/ppatteries.ml.depends > ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl > -package sqlite3 -package zip -package mcl -modules common_src/algMap.ml > > common_src/algMap.ml.depends > ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl > -package sqlite3 -package zip -package mcl -modules common_src/mapsSets.ml > > common_src/mapsSets.ml.depends > ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl > -package sqlite3 -package zip -package mcl -modules common_src/ppr.ml > > common_src/ppr.ml.depends > ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm > -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src > -I pplacer_src -I pam_src -I cdd_src -I tests -I json_src -I pdprune_src -I > tests/rppr -I tests/guppy -I tests/json -I tests/pplacer -o > common_src/ppr.cmo common_src/ppr.ml > ocamlfind ocamldep -package batteries -package csv -package xmlm -package gsl > -package sqlite3 -package zip -package mcl -modules common_src/number.ml > > common_src/number.ml.depends > ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm > -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src > -I pplacer_src -I pam_src -I cdd_src -I tests -I json_src -I pdprune_src -I > tests/rppr -I tests/guppy -I tests/json -I tests/pplacer -o > common_src/mapsSets.cmo common_src/mapsSets.ml > ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm > -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src > -I pplacer_src -I pam_src -I cdd_src -I tests -I json_src -I pdprune_src -I > tests/rppr -I tests/guppy -I tests/json -I tests/pplacer -o > common_src/number.cmo common_src/number.ml > ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm > -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src > -I pplacer_src -I pam_src -I cdd_src -I tests -I json_src -I pdprune_src -I > tests/rppr -I tests/guppy -I tests/json -I tests/pplacer -o > common_src/algMap.cmo common_src/algMap.ml > ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package xmlm > -package gsl -package sqlite3 -package zip -package mcl -thread -I common_src > -I pplacer_src -I pam_src -I cdd_src -I tests -I json_src -I pdprune_src -I > tests/rppr -I tests/guppy -I tests/json -I tests/pplacer -o > common_src/ppatteries.cmo common_src/ppatteries.ml > + ocamlfind ocamlc -c -annot -w Z -package batteries -package csv -package > xmlm -package gsl -package sqlite3 -package zip -package mcl -thread -I > common_src -I pplacer_src -I pam_src -I cdd_src -I tests -I json_src -I > pdprune_src -I tests/rppr -I tests/guppy -I tests/json -I tests/pplacer -o > common_src/ppatteries.cmo common_src/ppatteries.ml > File "common_src/ppatteries.ml", line 784, characters 2-16: > 784 | Gsl_error.init (); > ^^^^^^^^^^^^^^ > Error: Unbound module Gsl_error > Command exited with code 2. > make[3]: *** [Makefile:21: pplacer.native] Error 10 The full build log is available from: http://qa-logs.debian.net/2020/11/25/pplacer_1.1~alpha19-3_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
