Your message dated Tue, 27 Jun 2023 16:23:07 +0000
with message-id <e1qebt9-002zos...@fasolo.debian.org>
and subject line Bug#1039528: fixed in insighttoolkit5 5.3.0-4
has caused the Debian Bug report #1039528,
regarding plastimatch: FTBFS: Could not find a package configuration file
provided by "VTK"
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
1039528: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1039528
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: plastimatch
Version: 1.9.4+dfsg.1-1
Severity: serious
Tags: ftbfs sid bookworm
Justification: fails to build from source (but built successfully in the past)
X-Debbugs-Cc: sramac...@debian.org
https://buildd.debian.org/status/fetch.php?pkg=plastimatch&arch=amd64&ver=1.9.4%2Bdfsg.1-1%2Bb1&stamp=1687808525&raw=0
-- Found HDF5:
/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.a;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.a;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so
(found version "1.10.8") found components: CXX C HL
CMake Error at
/usr/lib/x86_64-linux-gnu/cmake/ITK-5.3/Modules/ITKVtkGlue.cmake:16
(find_package):
Could not find a package configuration file provided by "VTK" with any of
the following names:
VTKConfig.cmake
vtk-config.cmake
Add the installation prefix of "VTK" to CMAKE_PREFIX_PATH or set "VTK_DIR"
to a directory containing one of the above files. If "VTK" provides a
separate development package or SDK, be sure it has been installed.
Call Stack (most recent call first):
/usr/lib/x86_64-linux-gnu/cmake/ITK-5.3/ITKModuleAPI.cmake:76 (include)
/usr/lib/x86_64-linux-gnu/cmake/ITK-5.3/ITKModuleAPI.cmake:31
(itk_module_load)
/usr/lib/x86_64-linux-gnu/cmake/ITK-5.3/ITKModuleAPI.cmake:129
(_itk_module_config_recurse)
/usr/lib/x86_64-linux-gnu/cmake/ITK-5.3/ITKConfig.cmake:89 (itk_module_config)
CMakeLists.txt:573 (find_package)
-- Configuring incomplete, errors occurred!
cd obj-x86_64-linux-gnu && tail -v -n \+0 CMakeCache.txt
==> CMakeCache.txt <==
# This is the CMakeCache file.
# For build in directory: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu
# It was generated by CMake: /usr/bin/cmake
# You can edit this file to change values found and used by cmake.
# If you do not want to change any of the values, simply exit the editor.
# If you do want to change a value, simply edit, save, and exit the editor.
# The syntax for the file is as follows:
# KEY:TYPE=VALUE
# KEY is the name of a variable in the cache.
# TYPE is a hint to GUIs for the type of VALUE, DO NOT EDIT TYPE!.
# VALUE is the current value for the KEY.
########################
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CMAKE_COLOR_MAKEFILE:BOOL=ON
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//A wrapper around 'ar' adding the appropriate '--plugin' option
// for the GCC compiler
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//A wrapper around 'ranlib' adding the appropriate '--plugin' option
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//A wrapper around 'ar' adding the appropriate '--plugin' option
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//A wrapper around 'ranlib' adding the appropriate '--plugin' option
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CMAKE_C_COMPILER_RANLIB:FILEPATH=/usr/bin/gcc-ranlib-12
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//Flags used by the linker during RELWITHDEBINFO builds.
CMAKE_EXE_LINKER_FLAGS_RELWITHDEBINFO:STRING=
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CMAKE_EXPORT_COMPILE_COMMANDS:BOOL=
//No help, variable specified on the command line.
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//Value Computed by CMake.
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//No help, variable specified on the command line.
CMAKE_INSTALL_LOCALSTATEDIR:UNINITIALIZED=/var
//Install path prefix, prepended onto install directories.
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//No help, variable specified on the command line.
CMAKE_INSTALL_RUNSTATEDIR:UNINITIALIZED=/run
//No help, variable specified on the command line.
CMAKE_INSTALL_SYSCONFDIR:UNINITIALIZED=/etc
//Path to a program.
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//Path to a program.
CMAKE_MAKE_PROGRAM:FILEPATH=/usr/bin/gmake
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CMAKE_MODULE_LINKER_FLAGS:STRING=-Wl,-z,relro -Wl,-z,now
//Flags used by the linker during the creation of modules during
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CMAKE_MODULE_LINKER_FLAGS_DEBUG:STRING=
//Flags used by the linker during the creation of modules during
// MINSIZEREL builds.
CMAKE_MODULE_LINKER_FLAGS_MINSIZEREL:STRING=
//Flags used by the linker during the creation of modules during
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//Flags used by the linker during the creation of modules during
// RELWITHDEBINFO builds.
CMAKE_MODULE_LINKER_FLAGS_RELWITHDEBINFO:STRING=
//Path to a program.
CMAKE_NM:FILEPATH=/usr/bin/nm
//Path to a program.
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//Value Computed by CMake
CMAKE_PROJECT_DESCRIPTION:STATIC=
//Value Computed by CMake
CMAKE_PROJECT_HOMEPAGE_URL:STATIC=
//Value Computed by CMake
CMAKE_PROJECT_NAME:STATIC=plastimatch
//Path to a program.
CMAKE_RANLIB:FILEPATH=/usr/bin/ranlib
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CMAKE_READELF:FILEPATH=/usr/bin/readelf
//Flags used by the linker during the creation of shared libraries
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// during MINSIZEREL builds.
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//Flags used by the linker during the creation of shared libraries
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CMAKE_SHARED_LINKER_FLAGS_RELEASE:STRING=
//Flags used by the linker during the creation of shared libraries
// during RELWITHDEBINFO builds.
CMAKE_SHARED_LINKER_FLAGS_RELWITHDEBINFO:STRING=
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CMAKE_SKIP_INSTALL_ALL_DEPENDENCY:UNINITIALIZED=ON
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CMAKE_SKIP_INSTALL_RPATH:BOOL=NO
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CMAKE_SKIP_RPATH:BOOL=ON
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//Flags used by the linker during the creation of static libraries
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CMAKE_VERBOSE_MAKEFILE:BOOL=ON
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CUDA_64_BIT_DEVICE_CODE:BOOL=ON
//Generate and parse .cubin files in Device mode.
CUDA_BUILD_CUBIN:BOOL=OFF
//Build in Emulation mode
CUDA_BUILD_EMULATION:BOOL=OFF
//"cudart" library
CUDA_CUDART_LIBRARY:FILEPATH=CUDA_CUDART_LIBRARY-NOTFOUND
//"cuda" library (older versions only).
CUDA_CUDA_LIBRARY:FILEPATH=CUDA_CUDA_LIBRARY-NOTFOUND
//Did we find cuda?
CUDA_FOUND:BOOL=FALSE
//Directory to put all the output files. If blank it will default
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//Path to a program.
CUDA_NVCC_EXECUTABLE:FILEPATH=CUDA_NVCC_EXECUTABLE-NOTFOUND
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//Semi-colon delimit multiple arguments. during RELEASE builds.
CUDA_NVCC_FLAGS_RELEASE:STRING=
//Semi-colon delimit multiple arguments. during RELWITHDEBINFO
// builds.
CUDA_NVCC_FLAGS_RELWITHDEBINFO:STRING=
//Path to a file.
CUDA_SDK_ROOT_DIR:PATH=CUDA_SDK_ROOT_DIR-NOTFOUND
//Compile CUDA objects with separable compilation enabled. Requires
// CUDA 5.0+
CUDA_SEPARABLE_COMPILATION:BOOL=OFF
//Path to a file.
CUDA_TOOLKIT_INCLUDE:PATH=CUDA_TOOLKIT_INCLUDE-NOTFOUND
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//"cublas" library
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//No help, variable specified on the command line.
FETCHCONTENT_FULLY_DISCONNECTED:UNINITIALIZED=ON
//Root directory of fftw.
FFTW_DIR:PATH=/usr/include
//Path to a file.
FFTW_INCLUDE_DIR:PATH=/usr/include
//Path to a library.
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GIT_EXECUTABLE:FILEPATH=GIT_EXECUTABLE-NOTFOUND
//HDF5 CXX Wrapper compiler. Used only to detect HDF5 compile
// flags.
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//Path to a library.
HDF5_CXX_LIBRARY_dl:FILEPATH=/usr/lib/x86_64-linux-gnu/libdl.a
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HDF5_CXX_LIBRARY_hdf5:FILEPATH=/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so
//Path to a library.
HDF5_CXX_LIBRARY_hdf5_cpp:FILEPATH=/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so
//Path to a library.
HDF5_CXX_LIBRARY_hdf5_hl:FILEPATH=/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl.so
//Path to a library.
HDF5_CXX_LIBRARY_hdf5_hl_cpp:FILEPATH=/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl_cpp.so
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HDF5_CXX_LIBRARY_m:FILEPATH=/usr/lib/x86_64-linux-gnu/libm.so
//Path to a library.
HDF5_CXX_LIBRARY_pthread:FILEPATH=/usr/lib/x86_64-linux-gnu/libpthread.a
//Path to a library.
HDF5_CXX_LIBRARY_sz:FILEPATH=/usr/lib/x86_64-linux-gnu/libsz.so
//Path to a library.
HDF5_CXX_LIBRARY_z:FILEPATH=/usr/lib/x86_64-linux-gnu/libz.so
//HDF5 C Wrapper compiler. Used only to detect HDF5 compile flags.
HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5cc
//Path to a library.
HDF5_C_LIBRARY_crypto:FILEPATH=/usr/lib/x86_64-linux-gnu/libcrypto.so
//Path to a library.
HDF5_C_LIBRARY_curl:FILEPATH=/usr/lib/x86_64-linux-gnu/libcurl.so
//Path to a library.
HDF5_C_LIBRARY_dl:FILEPATH=/usr/lib/x86_64-linux-gnu/libdl.a
//Path to a library.
HDF5_C_LIBRARY_hdf5:FILEPATH=/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so
//Path to a library.
HDF5_C_LIBRARY_hdf5_hl:FILEPATH=/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl.so
//Path to a library.
HDF5_C_LIBRARY_m:FILEPATH=/usr/lib/x86_64-linux-gnu/libm.so
//Path to a library.
HDF5_C_LIBRARY_pthread:FILEPATH=/usr/lib/x86_64-linux-gnu/libpthread.a
//Path to a library.
HDF5_C_LIBRARY_sz:FILEPATH=/usr/lib/x86_64-linux-gnu/libsz.so
//Path to a library.
HDF5_C_LIBRARY_z:FILEPATH=/usr/lib/x86_64-linux-gnu/libz.so
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//The directory containing a CMake configuration file for HDF5.
HDF5_DIR:PATH=HDF5_DIR-NOTFOUND
//The directory containing a CMake configuration file for ITK.
ITK_DIR:PATH=/usr/lib/x86_64-linux-gnu/cmake/ITK-5.3
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//Path to a program.
OCTAVE_CONFIG:FILEPATH=OCTAVE_CONFIG-NOTFOUND
//Path to a file.
OCTAVE_INCLUDE_DIR:PATH=OCTAVE_INCLUDE_DIR-NOTFOUND
//Path to a library.
OCTAVE_LIBRARIES:FILEPATH=OCTAVE_LIBRARIES-NOTFOUND
//Path to a program.
OCTAVE_MKOCTFILE:FILEPATH=OCTAVE_MKOCTFILE-NOTFOUND
//Path to a file.
OpenCL_INCLUDE_DIR:PATH=OpenCL_INCLUDE_DIR-NOTFOUND
//Path to a library.
OpenCL_LIBRARY:FILEPATH=OpenCL_LIBRARY-NOTFOUND
//Enable regression testing
PLM_BUILD_TESTING:BOOL=ON
//Set to ON to allow build of QT4 Designer Plugins
PLM_CONFIG_BUILD_QT_PLUGINS:BOOL=OFF
//Generate .clang_complete for hipster Vim-ers
PLM_CONFIG_CLANG_COMPLETE:BOOL=OFF
//Set to ON to configure build for debian
PLM_CONFIG_DEBIAN_BUILD:BOOL=ON
//Set to ON to allow build with CUDA
PLM_CONFIG_ENABLE_CUDA:BOOL=ON
//Set to ON to allow build with DCMTK
PLM_CONFIG_ENABLE_DCMTK:BOOL=ON
//Set to ON to allow building fatm
PLM_CONFIG_ENABLE_FATM:BOOL=OFF
//Set to ON to allow build of Matlab plugins
PLM_CONFIG_ENABLE_MATLAB:BOOL=OFF
//Set to ON to allow building mondoshot
PLM_CONFIG_ENABLE_MONDOSHOT:BOOL=OFF
//Set to ON to allow build with OpenCL
PLM_CONFIG_ENABLE_OPENCL:BOOL=ON
//Set to ON to allow build with OpenMP
PLM_CONFIG_ENABLE_OPENMP:BOOL=ON
//Set to ON to allow build with Opt4D
PLM_CONFIG_ENABLE_OPT4D:BOOL=OFF
//Set to ON to allow building plastimatch
PLM_CONFIG_ENABLE_PLASTIMATCH:BOOL=ON
//Set to ON to allow build of experimental plastimatch_qt executable
PLM_CONFIG_ENABLE_PLASTIMATCH_QT:BOOL=OFF
//Set to ON to allow build with QT
PLM_CONFIG_ENABLE_QT:BOOL=ON
//Set to ON to allow build with SSE
PLM_CONFIG_ENABLE_SSE2:BOOL=ON
//Set to ON to allow src/plastimatch to be built using nested superbuild
PLM_CONFIG_ENABLE_SUPERBUILD:BOOL=ON
//Set to ON to allow build of experimental viscous fluid registration
// algorithm
PLM_CONFIG_ENABLE_VISCOUS:BOOL=OFF
//By default, harden linear transforms rather than resample
PLM_CONFIG_HARDEN_XFORM_BY_DEFAULT:BOOL=OFF
//Include libraries in install
PLM_CONFIG_INSTALL_LIBRARIES:BOOL=ON
//Set to ON to use the ITKV4 registration framework
PLM_CONFIG_ITKV4_REGISTRATION:BOOL=OFF
//Use legacy code for extending b-spline domain
PLM_CONFIG_LEGACY_BSPLINE_EXTEND:BOOL=OFF
//Use legacy code for reading and writing b-spline xform files
PLM_CONFIG_LEGACY_BSPLINE_XFORM_IO:BOOL=OFF
//Use legacy code for verifying CUDA runtime
PLM_CONFIG_LEGACY_CUDA_DELAYLOAD:BOOL=ON
//Use legacy 1D texture for CUDA DRR generation
PLM_CONFIG_LEGACY_DRR_CUDA_TEXTURE:BOOL=OFF
//For ITK metrics, the legacy implementation of the mi metric is
// Viola-Wells to Mattes
PLM_CONFIG_LEGACY_MI_METRIC:BOOL=OFF
//Use legacy method for specifying projection geometry
PLM_CONFIG_LEGACY_PROJ_GEO:BOOL=ON
//Use legacy algorithm for exact ray tracing
PLM_CONFIG_LEGACY_RAY_TRACE_EXACT:BOOL=OFF
//Use legacy regularization lambda value scheme where values are
// squared
PLM_CONFIG_LEGACY_SQUARED_REGULARIZER:BOOL=OFF
//Set to ON to build only libraries
PLM_CONFIG_LIBRARY_BUILD:BOOL=OFF
//Set to ON to build windows DLLs without manifests
PLM_CONFIG_NOMANIFEST:BOOL=OFF
//Native support for volumes with irregular slice thicknesses
PLM_CONFIG_VOL_LIST:BOOL=OFF
//Generate GPU code for all compute capabilities?
PLM_CUDA_ALL_DEVICES:BOOL=OFF
//Installation directory for executables
PLM_INSTALL_BIN_DIR:PATH=bin
//Installation directory for CMake files
PLM_INSTALL_CMAKE_DIR:PATH=lib/cmake/plastimatch
//Installation directory for header files
PLM_INSTALL_INCLUDE_DIR:PATH=include/plastimatch
//Installation directory for libraries
PLM_INSTALL_LIB_DIR:PATH=lib
//Add full RPATH to install
PLM_INSTALL_RPATH:BOOL=OFF
//Set this when building 32-bit packages on a 64-bit machine
PLM_PACKAGE_32BIT:BOOL=OFF
//Use the old code for creating PlastimatchConfig.cmake and friends
PLM_PACKAGE_LEGACY_CMAKE_CONFIG:BOOL=OFF
//Set to ON when packaging binaries with NSIS
PLM_PACKAGE_NSIS:BOOL=OFF
//Set to ON when packaging binaries with WIX
PLM_PACKAGE_WIX:BOOL=ON
//Prefer using the newer version of patched ITK demons files
PLM_PREFER_NEW_ITK_DEMONS:BOOL=OFF
//Prefer the system dlib over the included dlib
PLM_PREFER_SYSTEM_DLIB:BOOL=ON
//Prefer DCMTK provided by operating system
PLM_SYSTEM_DCMTK:STRING=PREFERRED
//Prefer ITK provided by operating system
PLM_SYSTEM_ITK:STRING=PREFERRED
//Name of the computer/site where compile is being run
SITE:STRING=x86-conova-01
//SSE2 Available?
SSE2_FOUND:BOOL=true
//The directory containing a CMake configuration file for VTK.
VTK_DIR:PATH=VTK_DIR-NOTFOUND
//Value Computed by CMake
devillard_BINARY_DIR:STATIC=/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/libs/devillard
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-DBUILD_TESTING:BOOL=ON .. returned exit code 1
make[1]: *** [debian/rules:28: override_dh_auto_configure] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:18: binary-arch] Error 2
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit
status 2
Cheers
--
Sebastian Ramacher
--- End Message ---
--- Begin Message ---
Source: insighttoolkit5
Source-Version: 5.3.0-4
Done: Steve M. Robbins <s...@debian.org>
We believe that the bug you reported is fixed in the latest version of
insighttoolkit5, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1039...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Steve M. Robbins <s...@debian.org> (supplier of updated insighttoolkit5 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 27 Jun 2023 10:45:10 -0500
Source: insighttoolkit5
Architecture: source
Version: 5.3.0-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Steve M. Robbins <s...@debian.org>
Closes: 1039528
Changes:
insighttoolkit5 (5.3.0-4) unstable; urgency=medium
.
[ Steve Robbins ]
* [5fac045] Add VTK dependencies to -dev package. Closes: #1039528.
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--- End Message ---
