Hi, I try to build the latest version of Artemis[1] but when I try to build the current state in Git I get:
... CLASSPATH=/usr/share/java/biojava.jar:/usr/share/java/j2ssh-core.jar:/usr/share/java/ibatis.jar:/usr/share/java/log4j-1.2.jar:/usr/share/java/postgresql-jdbc3.jar:/usr/share/java/picard.jar:/usr/share/java/htsjdk.jar:/usr/share/java/commons-net.jar:/usr/share/java/commons-lang3.jar:/usr/share/java/batik-all.jar:/usr/share/java/batik-awt-util.jar:/usr/share/java/batik-dom.jar:/usr/share/java/batik-ext.jar:/usr/share/java/batik-svggen.jar:/usr/share/java/batik-util.jar:/usr/share/java/batik-xml.jar:/usr/share/EMBOSS/jemboss/lib/jemboss.jar:/build/artemis-17.0.1+dfsg javac -source 1.8 -target 1.8 uk/ac/sanger/artemis/MegaBlastComparisonData.java warning: [options] bootstrap class path not set in conjunction with -source 8 /build/artemis-17.0.1+dfsg/uk/ac/sanger/artemis/j2ssh/SshFileManager.java:437: warning: [removal] destroy() in Thread has been deprecated and marked for removal public void destroy() ^ /build/artemis-17.0.1+dfsg/uk/ac/sanger/artemis/components/alignment/BamView.java:565: error: cannot find symbol FTPSeekableStream fss = new FTPSeekableStream(new URL(alignmentFile), ftpSocketTimeout); ^ symbol: class FTPSeekableStream location: class BamView /build/artemis-17.0.1+dfsg/uk/ac/sanger/artemis/components/alignment/BamView.java:565: error: cannot find symbol FTPSeekableStream fss = new FTPSeekableStream(new URL(alignmentFile), ftpSocketTimeout); ^ symbol: class FTPSeekableStream location: class BamView Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 2 errors 2 warnings ... Any help would be welcome. Kind regards Andreas. [1] https://salsa.debian.org/med-team/artemis -- http://fam-tille.de