Hi Markus,
after fixing the patch I've build all class files successfully but
when it comes to generating the JAR it switches to a subdirectory
which leads to
...
cd jar_build/build; \
rm -rf META-INF/MANIFEST.MF; \
echo "Main-Class: uk.ac.sanger.artemis.components.ArtemisMain\nPermissions:
all-permissions" > manifest-art; \
jar cmf manifest-art ../artemis.jar META-INF/services
images/Wellcome_Sanger_Institute_Logo_Landscape_Digital_RGB_Full_Colour.jpg
images/icon.gif README.md etc \
artemis_sqlmap org uk com net htsjdk picard gov joptsimple
ngs freemarker ; \
echo "Main-Class: uk.ac.sanger.artemis.circular.DNADraw\nPermissions:
all-permissions" > manifest-circular; \
jar cmf manifest-circular ../DNAPlotter.jar
images/Wellcome_Sanger_Institute_Logo_Landscape_Digital_RGB_Full_Colour.jpg
README.md etc \
org uk com net htsjdk picard gov joptsimple ngs
freemarker ; \
echo "Main-Class:
uk.ac.sanger.artemis.components.alignment.BamView\nPermissions:
all-permissions" > manifest-bamview; \
jar cmf manifest-bamview ../bamview.jar META-INF/services etc org uk com net
htsjdk picard gov joptsimple ngs freemarker ; \
echo "Main-Class: uk.ac.sanger.artemis.components.ActMain\nPermissions:
all-permissions" > manifest-act; \
jar cmf manifest-act ../act.jar META-INF/services
images/Wellcome_Sanger_Institute_Logo_Landscape_Digital_RGB_Full_Colour.jpg
images/icon.gif README.md etc \
artemis_sqlmap org uk com net htsjdk picard gov joptsimple
ngs freemarker ; \
META-INF/services : no such file or directory
images/Wellcome_Sanger_Institute_Logo_Landscape_Digital_RGB_Full_Colour.jpg :
no such file or directory
images/icon.gif : no such file or directory
README.md : no such file or directory
...
Is there any clever way to solve this instead of doing a lot of copying or
symlinking?
Kind regards
Andreas.
[1] https://salsa.debian.org/med-team/artemis
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