Author: moeller
Date: 2010-08-28 22:11:34 +0000 (Sat, 28 Aug 2010)
New Revision: 5196
Modified:
trunk/packages/ensembl/ensembl/57/debian/control
trunk/packages/ensembl/ensembl/57/debian/ensembl.dirs
trunk/packages/ensembl/ensembl/57/debian/ensembl.links
trunk/packages/ensembl/ensembl/57/debian/postinst
trunk/packages/ensembl/ensembl/57/debian/rules
Log:
Round of updates for the Ensembl package.
Modified: trunk/packages/ensembl/ensembl/57/debian/control
===================================================================
--- trunk/packages/ensembl/ensembl/57/debian/control 2010-08-27 12:28:44 UTC
(rev 5195)
+++ trunk/packages/ensembl/ensembl/57/debian/control 2010-08-28 22:11:34 UTC
(rev 5196)
@@ -34,3 +34,15 @@
.
We will work to try and remove these dependencies and allow Ensembl
to run on an up-do-date machine.
+
+Package: ensembl-bin
+Architecture: any
+Description: platform-specific files of Ensembl
+ The Ensembl website is mostly implemented in Perl. But just a few
+ bits do appear as binaries. Those are gathered in this package.
+
+Package: ensembl-doc
+Section: doc
+Architecture: all
+Description: tutorials and othe documentation for Ensembl
+ The description will follow once we know what is in there :)
Modified: trunk/packages/ensembl/ensembl/57/debian/ensembl.dirs
===================================================================
--- trunk/packages/ensembl/ensembl/57/debian/ensembl.dirs 2010-08-27
12:28:44 UTC (rev 5195)
+++ trunk/packages/ensembl/ensembl/57/debian/ensembl.dirs 2010-08-28
22:11:34 UTC (rev 5196)
@@ -1,6 +1,6 @@
-usr/share/ensembl
usr/bin
-var/log/ensembl/logs
+var/log
+usr/share/ensembl/logs
var/cache/ensembl/img-cache
var/tmp/ensembl/img-tmp
var/tmp/ensembl/tmp
Modified: trunk/packages/ensembl/ensembl/57/debian/ensembl.links
===================================================================
--- trunk/packages/ensembl/ensembl/57/debian/ensembl.links 2010-08-27
12:28:44 UTC (rev 5195)
+++ trunk/packages/ensembl/ensembl/57/debian/ensembl.links 2010-08-28
22:11:34 UTC (rev 5196)
@@ -1,4 +1,4 @@
-usr/share/ensembl/logs var/log/ensembl/logs
+usr/share/ensembl/logs var/log/ensembl
usr/share/ensembl/img-cache var/cache/ensembl/img-cache
usr/share/ensembl/img-tmp var/tmp/ensembl/img-tmp
usr/share/ensembl/tmp var/tmp/ensembl/tmp
Modified: trunk/packages/ensembl/ensembl/57/debian/postinst
===================================================================
--- trunk/packages/ensembl/ensembl/57/debian/postinst 2010-08-27 12:28:44 UTC
(rev 5195)
+++ trunk/packages/ensembl/ensembl/57/debian/postinst 2010-08-28 22:11:34 UTC
(rev 5196)
@@ -20,22 +20,25 @@
case "$1" in
configure)
- #a2enmod perl
- #a2enmod deflate
- #a2enmod expires
- #a2enmod headers
+ a2enmod perl
+ a2enmod deflate
+ a2enmod expires
+ a2enmod headers
mysql -uroot << EOMYSQL
drop database if exists ensembl_web_user_db;
create database ensembl_web_user_db;
grant all privileges on ensembl_web_user_db.* to ensembl@'%' identified by
'ensembl';
grant all privileges on ensembl_web_user_db.* to ense...@localhost identified
by 'ensembl';
EOMYSQL
+ echo "Preparing a series of directories."
zcat /usr/share/doc/ensembl/ensembl_web_user_db.sql.gz | mysql
-uensembl -pensembl ensembl_web_user_db
- for d in var/log/ensembl/logs /var/cache/ensembl/img-cache
/var/tmp/ensembl/img-tmp /var/tmp/ensembl/tmp
+ for d in var/log/ensembl /var/cache/ensembl/img-cache
/var/tmp/ensembl/img-tmp /var/tmp/ensembl/tmp
do
- if [ ! -d "$d" ]; then mkdir -p "$d"; fi
- chown nobody.nogroup "$d"
- chmod 755 "$d"
+ if [ ! -d "$d" ]; then
+ mkdir -p "$d"
+ chown nobody.nogroup "$d"
+ chmod 755 "$d"
+ fi
done
;;
Modified: trunk/packages/ensembl/ensembl/57/debian/rules
===================================================================
--- trunk/packages/ensembl/ensembl/57/debian/rules 2010-08-27 12:28:44 UTC
(rev 5195)
+++ trunk/packages/ensembl/ensembl/57/debian/rules 2010-08-28 22:11:34 UTC
(rev 5196)
@@ -32,7 +32,7 @@
dh_testdir
dh_testroot
dh_prep
- d=$(DESTDIR)/usr/share/ensembl ; \
+ d="$(DESTDIR)/usr/share/ensembl" ; \
if [ ! -d "$$d" ]; then \
echo "Creating directory '$$d'." ; \
mkdir -p "$$d" ; \
@@ -41,13 +41,23 @@
ensembl-draw ensembl-external \
ensembl-functgenomics ensembl-variation \
htdocs modules perl public-plugins utils \
- $$d
- d=$(DESTDIR)/usr/bin ; \
- if [ ! -d "$$d" ]; then \
- echo "Creating directory '$$d'." ; \
- mkdir -p "$$d" ; \
+ $$d ; \
+ dd="$(DESTDIR)-bin/usr/bin" ; \
+ if [ ! -d "$$$d" ]; then \
+ echo "Creating directory '$$dd'." ; \
+ mkdir -p "$$dd" ; \
fi ; \
- mv ensembl-variation/C_code/calc_genotypes $$d
+ mv $$d/ensembl-variation/C_code/calc_genotypes $$dd ; \
+ ddd="$(DESTDIR)-doc/usr/share/doc/ensembl" ; \
+ cd $$d; \
+ for dddd in */docs ; \
+ do \
+ ddddd=`dirname $$dddd` ; \
+ dddddd="$$ddd/usr/$$ddddd" ; \
+ echo "moving documentation from $$dddd to $$dddddd" ; \
+ mkdir -p "$$dddddd" ; \
+ mv $$dddd/* $$dddddd/ ; \
+ done
touch $@
install-paths: install-copying
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