Author: moeller
Date: 2010-08-28 22:31:00 +0000 (Sat, 28 Aug 2010)
New Revision: 5197
Added:
trunk/packages/ensembl/ensembl/57/debian/ensembl.overwrites/Plugins.pm
Modified:
trunk/packages/ensembl/ensembl/57/debian/control
trunk/packages/ensembl/ensembl/57/debian/ensembl.links
trunk/packages/ensembl/ensembl/57/debian/rules
Log:
Further improvements.
Modified: trunk/packages/ensembl/ensembl/57/debian/control
===================================================================
--- trunk/packages/ensembl/ensembl/57/debian/control 2010-08-28 22:11:34 UTC
(rev 5196)
+++ trunk/packages/ensembl/ensembl/57/debian/control 2010-08-28 22:31:00 UTC
(rev 5197)
@@ -11,8 +11,8 @@
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/ensembl/ensembl/57/
Package: ensembl
-Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}, apache2, csh, expat, perl,
libcgi-pm-perl, libcgi-session-perl, libdb-file-lock-perl, libdbd-mysql,
perl-modules, mysql-server
+Architecture: all
+Depends: ${shlibs:Depends}, ${misc:Depends}, apache2, csh, expat, perl,
libcgi-pm-perl, libcgi-session-perl, libdb-file-lock-perl, libdbd-mysql,
perl-modules, mysql-server, ensembl-bin
Recommends: ttf-mscorefonts-installer, acedb-other-dotter, libcgi-ajax-perl,
libcache-memcached-perl, libclass-dbi-sweet-perl, libclass-std-perl,
libclass-std-utils-perl, libcompress-bzip2-perl, libfile-spec-perl,
libdata-uuid-libuuid-perl, libgd-text-perl, libhash-merge-perl,
libhtml-parser-perl, liblist-moreutils-perl, liblog-log4perl-perl,
libmailtools-perl, libwww-curl-perl, libapache2-mod-perl2,
libnumber-format-perl, libgd-gd2-noxpm-perl, libpdf-api2-perl,
libsys-hostname-long-perl, libtemplate-plugin-number-format-perl,
libxml-dom-perl, libxml-rss-perl, libxml-simple-perl, libbsd-resource-perl,
libxml-xpath-perl, libxml-atom-perl, libjson-perl,
libclass-data-inheritable-perl, libconfig-inifiles-perl,
libdevel-stacktrace-perl, libexception-class-perl, libhtml-template-perl,
libimage-size-perl, libio-string-perl, libipc-run-perl, libxml-libxml-perl,
libole-storage-lite-perl, libparse-recdescent-perl,
libspreadsheet-writeexcel-perl, libmime-types-perl, libmath-bezier-perl,
librtf-writer-perl, libbio-das-lite-perl, bioperl1.2.3,
libparallel-useragent-perl
Description: Installs a basic Ensembl 57 genome browser.
The Ensembl 57 basic installation is a full copy of the public Ensembl
@@ -45,4 +45,6 @@
Section: doc
Architecture: all
Description: tutorials and othe documentation for Ensembl
- The description will follow once we know what is in there :)
+ Several Perl packages of Ensmebl offer a description of their API.
+ The compara package offers a tutorial. Also the Ensembl schema
+ is distributed with this documentation package.
Modified: trunk/packages/ensembl/ensembl/57/debian/ensembl.links
===================================================================
--- trunk/packages/ensembl/ensembl/57/debian/ensembl.links 2010-08-28
22:11:34 UTC (rev 5196)
+++ trunk/packages/ensembl/ensembl/57/debian/ensembl.links 2010-08-28
22:31:00 UTC (rev 5197)
@@ -1,4 +1,4 @@
-usr/share/ensembl/logs var/log/ensembl
-usr/share/ensembl/img-cache var/cache/ensembl/img-cache
-usr/share/ensembl/img-tmp var/tmp/ensembl/img-tmp
-usr/share/ensembl/tmp var/tmp/ensembl/tmp
+/usr/share/ensembl/logs /var/log/ensembl
+/usr/share/ensembl/img-cache /var/cache/ensembl/img-cache
+/usr/share/ensembl/img-tmp /var/tmp/ensembl/img-tmp
+/usr/share/ensembl/tmp /var/tmp/ensembl/tmp
Added: trunk/packages/ensembl/ensembl/57/debian/ensembl.overwrites/Plugins.pm
===================================================================
--- trunk/packages/ensembl/ensembl/57/debian/ensembl.overwrites/Plugins.pm
(rev 0)
+++ trunk/packages/ensembl/ensembl/57/debian/ensembl.overwrites/Plugins.pm
2010-08-28 22:31:00 UTC (rev 5197)
@@ -0,0 +1,11 @@
+## If you wish to use the EnsEMBL web-code from the command line, you will
+## need to hardcode the server root here
+
+$SiteDefs::ENSEMBL_SERVERROOT = '/usr/share/ensembl';
+
+$SiteDefs::ENSEMBL_PLUGINS = [
+ 'EnsEMBL::Mirror' =>
$SiteDefs::ENSEMBL_SERVERROOT.'/public-plugins/mirror',
+ 'EnsEMBL::Ensembl' =>
$SiteDefs::ENSEMBL_SERVERROOT.'/public-plugins/ensembl'
+];
+
+1;
Modified: trunk/packages/ensembl/ensembl/57/debian/rules
===================================================================
--- trunk/packages/ensembl/ensembl/57/debian/rules 2010-08-28 22:11:34 UTC
(rev 5196)
+++ trunk/packages/ensembl/ensembl/57/debian/rules 2010-08-28 22:31:00 UTC
(rev 5197)
@@ -24,8 +24,8 @@
install: install-copying install-paths
# copying files that are considered too different from the original
# and/or the original too variable across releases to be patched
- cp debian/ensembl.overwrites/Plugins.pm-dist
$(DESTDIR)/usr/share/ensembl/conf/
- cp debian/ensembl.overwrites/confSiteDefs.pm
$(DESTDIR)/usr/share/ensembl/conf/SiteDefs.pm
+ cp debian/ensembl.overwrites/Plugins.pm*
$(DESTDIR)/usr/share/ensembl/conf/
+ cp debian/ensembl.overwrites/confSiteDefs.pm
$(DESTDIR)/usr/share/ensembl/conf/SiteDefs.pm
cp debian/ensembl.overwrites/pluginSiteDefs.pm
$(DESTDIR)/usr/share/ensembl/public-plugins/mirror/conf/SiteDefs.pm
install-copying:
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