This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository python-pbcore.
from b6a9edd Add override for clean target in d/rules new dafea9c Drop non-functional python3 package new 68a3ebb Remove executable bit from installed h5 data files new 10a2a68 Install upstream readme and changelog files new cd3bf35 Imported Upstream version 1.2.2+dfsg1 new 74b076b Merge tag 'upstream/1.2.2+dfsg1' new 30c724c Update version in changelog new b3b0948 Remove executable bit from non-executable file new fcb7bb9 Install upstream-provided convenience scripts new 16e3ec5 Refresh patch new b20eeb0 Install upstream changelog and readme in main package (not doc package) new 8574ffb Fix changelog file name The 11 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Summary of changes: CHANGELOG.org | 7 + bin/dataset.py | 2 + debian/README.Debian | 13 + debian/changelog | 2 +- debian/control | 46 +- debian/patches/enable-build-time-testing.patch | 10 +- debian/patches/remove-convenience-script.patch | 21 - debian/patches/series | 2 - debian/patches/support-python3.patch | 38 - debian/python-pbcore-data.install | 1 - debian/python-pbcore.docs | 1 + debian/python-pbcore.links | 1 - debian/python-pbcore.pyremove | 1 - debian/python3-pbcore.links | 1 - debian/python3-pbcore.pyremove | 1 - debian/rules | 18 +- debian/tests/control | 8 +- pbcore/__init__.py | 2 +- pbcore/data/Makefile | 7 + pbcore/data/datasets/__init__.py | 6 +- pbcore/data/datasets/alignment.dataset.xml | 8 + .../datasets/m150430_142051_Mon_p1_b25.sts.xml | 1 + ...100710482550000001823136404221563_s1_p0.sts.xml | 1 + pbcore/data/datasets/pbalchemysim0.reference.xml | 79 +- pbcore/data/datasets/subreadSetWithStats.xml | 1139 +++++++++++++++- pbcore/io/FastaIO.py | 2 +- pbcore/io/align/PacBioBamIndex.py | 83 +- pbcore/io/dataset/DataSetIO.py | 1400 ++++++++++++++------ pbcore/io/dataset/DataSetMembers.py | 206 ++- pbcore/io/dataset/DataSetReader.py | 233 ++-- pbcore/io/dataset/DataSetValidator.py | 53 +- pbcore/io/dataset/DataSetWriter.py | 19 +- pbcore/io/dataset/EntryPoints.py | 53 +- pbcore/util/ToolRunner.py | 3 + tests/test_pbdataset.py | 205 ++- tests/test_pbdataset_subtypes.py | 174 ++- 36 files changed, 3036 insertions(+), 811 deletions(-) create mode 100644 debian/README.Debian delete mode 100644 debian/patches/remove-convenience-script.patch delete mode 100644 debian/patches/support-python3.patch delete mode 100644 debian/python-pbcore-data.install create mode 100644 debian/python-pbcore.docs delete mode 100644 debian/python-pbcore.links delete mode 100644 debian/python-pbcore.pyremove delete mode 100644 debian/python3-pbcore.links delete mode 100644 debian/python3-pbcore.pyremove create mode 100644 pbcore/data/datasets/m150430_142051_Mon_p1_b25.sts.xml create mode 100755 pbcore/data/datasets/m150616_053259_ethan_c100710482550000001823136404221563_s1_p0.sts.xml -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-pbcore.git _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit