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commit 2037e215f428931f421b48355d3d76f9ba451772 Author: Emily Ruzich <[email protected]> Date: Wed Mar 30 12:59:50 2011 -0400 fixing manual --- doc/source/manual/AppA.rst | 2 +- doc/source/manual/AppB.rst | 2 +- doc/source/manual/AppInstall.rst | 2 +- doc/source/manual/AppReleaseNotes.rst | 10 +++++----- 4 files changed, 8 insertions(+), 8 deletions(-) diff --git a/doc/source/manual/AppA.rst b/doc/source/manual/AppA.rst index 4cc0611..c8a88b4 100755 --- a/doc/source/manual/AppA.rst +++ b/doc/source/manual/AppA.rst @@ -254,7 +254,7 @@ as outlined below **1. Set up the MRIs for Neuromag software access** - Run the mne_setup_mri too as described in Section 3.4. + Run the mne_setup_mri too as described in :ref:`BABCCEHF`. As a result, the directories mri/T1-neuromag and mri/brain-neuromag are set up. diff --git a/doc/source/manual/AppB.rst b/doc/source/manual/AppB.rst index 42c120f..682f73e 100755 --- a/doc/source/manual/AppB.rst +++ b/doc/source/manual/AppB.rst @@ -16,7 +16,7 @@ User environment In the Martinos Center computer network, the 2.7 version of MNE is located at /usr/pubsw/packages/mne/stable. To use this -version, follow Section 2.4 substituting /usr/pubsw/packages/mne/stable +version, follow :ref:`CIHCDHGI` substituting /usr/pubsw/packages/mne/stable for <MNE> and /usr/pubsw/packages/matlab/current for <Matlab> . For most users, the default shell is tcsh. diff --git a/doc/source/manual/AppInstall.rst b/doc/source/manual/AppInstall.rst index 2a580e3..bf467f0 100755 --- a/doc/source/manual/AppInstall.rst +++ b/doc/source/manual/AppInstall.rst @@ -154,7 +154,7 @@ How to get started After you have installed the software, a good place to start is to look at the manual: -- Source the correct setup script, see Section 2.4, +- Source the correct setup script, see :ref:`CIHCDHGI`, and - Say: ``mne_view_manual`` . diff --git a/doc/source/manual/AppReleaseNotes.rst b/doc/source/manual/AppReleaseNotes.rst index 1021489..ebf0d3a 100755 --- a/doc/source/manual/AppReleaseNotes.rst +++ b/doc/source/manual/AppReleaseNotes.rst @@ -41,7 +41,7 @@ The following overall changes have been made: directory tree. - Support for topologically connected source spaces was added, - see Section 3.5. + see :ref:`CIHCHDAE`. - A lot of bugs were fixed. @@ -208,7 +208,7 @@ mne_surf2bem Added the ``--shift`` option to move surface vertices outwards. Fixed some loopholes in topology checks. Also added the ``--innershift`` option to mne_setup_forward_model . For -more information, see Sections 3.7 and 5.6. +more information, see :ref:`CIHDBFEG` and Section 5.6. mne_forward_solution ==================== @@ -452,7 +452,7 @@ Improvements in the raw data processor mne_browse_raw /mne_process_raw include: systems. These kind of data should never be used as an input for source localization. -- The ``--savehere`` option was added, see Section 4.2.3. +- The ``--savehere`` option was added, see :ref:`CACFAAAJ`. - The stderr parameter was added to the averaging definition files, see Section 4.13.3. @@ -594,7 +594,7 @@ mne_setup_forward_model ----------------------- Added the ``--outershift`` and ``--scalpshift`` options, -see Section 3.7. +see :ref:`CIHDBFEG`. mne_simu -------- @@ -781,7 +781,7 @@ Miscellaneous see Section 9.8. - Added the --morph option to mne_setup_source_space and mne_make_source_space , - see Sections 3.5 and 5.4, respectively. + see :ref:`CIHCHDAE` and Section 5.4, respectively. - Added the --prefix option to mne_morph_labels , see Section 8.5. -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-mne.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
