This is an automated email from the git hooks/post-receive script. yoh pushed a commit to annotated tag v0.1 in repository python-mne.
commit 2db8e0ad9c50296f17c7f39a17844943d8e81270 Author: Emily Ruzich <[email protected]> Date: Wed Mar 30 11:39:10 2011 -0400 fixing manual --- .gitignore | 0 AUTHORS.rst | 0 LICENSE.txt | 0 MANIFEST.in | 0 Makefile | 0 README.rst | 0 doc/Makefile | 0 doc/source/_static/default.css | 0 doc/source/_static/favicon.ico | Bin doc/source/_static/logo.png | Bin doc/source/_static/navy.css | 0 doc/source/_templates/layout.html | 0 doc/source/conf.py | 0 doc/source/config_doc.rst | 0 doc/source/getting_started.rst | 0 doc/source/getting_started_at_martinos.rst | 0 doc/source/index.rst | 0 doc/source/manual/AppA.rst | 2 +- doc/source/manual/AppB.rst | 0 doc/source/manual/AppEULA.rst | 0 doc/source/manual/AppInstall.rst | 0 doc/source/manual/AppReleaseNotes.rst | 28 ++++++++++----------- doc/source/manual/analyze.rst | 0 doc/source/manual/browse.rst | 0 doc/source/manual/convert.rst | 0 doc/source/manual/cookbook.rst | 4 +-- doc/source/manual/forward.rst | 0 doc/source/manual/intro.rst | 0 doc/source/manual/list.rst | 0 doc/source/manual/matlab.rst | 0 doc/source/manual/mne.rst | 0 doc/source/manual/mne_analyze/MNE_preferences.png | Bin doc/source/manual/mne_analyze/adjust_alignment.png | Bin doc/source/manual/mne_analyze/adjust_lights.png | Bin doc/source/manual/mne_analyze/adjust_menu.png | Bin doc/source/manual/mne_analyze/cont_hpi_data.png | Bin doc/source/manual/mne_analyze/dipole_list.png | Bin .../manual/mne_analyze/dipole_parameters.png | Bin doc/source/manual/mne_analyze/dipoles_menu.png | Bin doc/source/manual/mne_analyze/epoch_selector.png | Bin .../manual/mne_analyze/field_mapping_pref.png | Bin doc/source/manual/mne_analyze/file_menu.png | Bin .../manual/mne_analyze/hardcopy_controls.png | Bin doc/source/manual/mne_analyze/help_menu.png | Bin doc/source/manual/mne_analyze/image_dialog.png | Bin doc/source/manual/mne_analyze/label_list.png | Bin doc/source/manual/mne_analyze/labels_menu.png | Bin doc/source/manual/mne_analyze/main_window.png | Bin doc/source/manual/mne_analyze/movie_dialog.png | Bin doc/source/manual/mne_analyze/mri_viewer.png | Bin doc/source/manual/mne_analyze/open_dialog.png | Bin .../manual/mne_analyze/overlay_management.png | Bin .../manual/mne_analyze/patch_selection_dialog.png | Bin .../manual/mne_analyze/save_label_timecourse.png | Bin doc/source/manual/mne_analyze/scales_dialog.png | Bin doc/source/manual/mne_analyze/surface_controls.png | Bin .../mne_analyze/surface_selection_dialog.png | Bin .../manual/mne_analyze/timecourse_manager.png | Bin doc/source/manual/mne_analyze/view_menu.png | Bin doc/source/manual/mne_analyze/viewer.png | Bin doc/source/manual/mne_analyze/viewer_options.png | Bin doc/source/manual/mne_analyze/visualize_hpi.png | Bin doc/source/manual/mne_analyze/windows_menu.png | Bin doc/source/manual/mne_browse_raw/adjust_menu.png | Bin doc/source/manual/mne_browse_raw/adust_menu.png | Bin doc/source/manual/mne_browse_raw/average_pref.png | Bin .../manual/mne_browse_raw/channel_selection.png | Bin doc/source/manual/mne_browse_raw/file_menu.png | Bin doc/source/manual/mne_browse_raw/filter_dialog.png | Bin doc/source/manual/mne_browse_raw/help_menu.png | Bin doc/source/manual/mne_browse_raw/main.png | Bin .../mne_browse_raw/manage_averages_dialog.png | Bin doc/source/manual/mne_browse_raw/new_selection.png | Bin doc/source/manual/mne_browse_raw/new_ssp.png | Bin .../manual/mne_browse_raw/open_dialog copy.png | Bin doc/source/manual/mne_browse_raw/open_dialog.png | Bin doc/source/manual/mne_browse_raw/process_menu.png | Bin doc/source/manual/mne_browse_raw/process_menu2.png | Bin doc/source/manual/mne_browse_raw/scales_dialog.png | Bin .../manual/mne_browse_raw/scales_dialog2.png | Bin doc/source/manual/mne_browse_raw/toolbar.png | Bin .../manual/mne_browse_raw/windows_menu-0.png | Bin .../manual/mne_browse_raw/windows_menu-1.png | Bin .../manual/mne_browse_raw/windows_menu-10.png | Bin .../manual/mne_browse_raw/windows_menu-11.png | Bin .../manual/mne_browse_raw/windows_menu-12.png | Bin .../manual/mne_browse_raw/windows_menu-13.png | Bin .../manual/mne_browse_raw/windows_menu-14.png | Bin .../manual/mne_browse_raw/windows_menu-15.png | Bin .../manual/mne_browse_raw/windows_menu-16.png | Bin .../manual/mne_browse_raw/windows_menu-17.png | Bin .../manual/mne_browse_raw/windows_menu-2.png | Bin .../manual/mne_browse_raw/windows_menu-3.png | Bin .../manual/mne_browse_raw/windows_menu-4.png | Bin .../manual/mne_browse_raw/windows_menu-5.png | Bin .../manual/mne_browse_raw/windows_menu-6.png | Bin .../manual/mne_browse_raw/windows_menu-7.png | Bin .../manual/mne_browse_raw/windows_menu-8.png | Bin .../manual/mne_browse_raw/windows_menu-9.png | Bin doc/source/manual/mne_browse_raw/windows_menu.png | Bin doc/source/manual/morph.rst | 0 doc/source/manual/pics/Averaging-flowchart.png | Bin doc/source/manual/pics/CoordinateSystems.png | Bin doc/source/manual/pics/Digitizer-example.png | Bin doc/source/manual/pics/Flowchart.png | Bin doc/source/manual/pics/HeadCS.png | Bin doc/source/manual/pics/cover.png | Bin doc/source/manual/pics/flat.png | Bin doc/source/manual/pics/morphed.png | Bin doc/source/manual/pics/neuromag.png | Bin doc/source/manual/pics/orig.png | Bin doc/source/manual/pics/proj-off-on.png | Bin doc/source/manual/pics/title_page.png | Bin doc/source/manual/reading.rst | 0 doc/source/manual/sampledata.rst | 0 doc/source/manual/utilities.rst | 0 doc/source/mne-python.rst | 0 doc/source/tutorial.rst | 0 doc/sphinxext/README.txt | 0 doc/sphinxext/docscrape.py | 0 doc/sphinxext/docscrape_sphinx.py | 0 doc/sphinxext/gen_rst.py | 0 doc/sphinxext/ipython_console_highlighting.py | 0 doc/sphinxext/numpy_ext/__init__.py | 0 doc/sphinxext/numpy_ext/docscrape.py | 0 doc/sphinxext/numpy_ext/docscrape_sphinx.py | 0 doc/sphinxext/numpy_ext/numpydoc.py | 0 doc/sphinxext/numpy_ext_old/__init__.py | 0 doc/sphinxext/numpy_ext_old/docscrape.py | 0 doc/sphinxext/numpy_ext_old/docscrape_sphinx.py | 0 doc/sphinxext/numpy_ext_old/numpydoc.py | 0 doc/sphinxext/only_directives.py | 0 examples/README.txt | 0 examples/extract_events_from_raw.py | 0 examples/plot_compute_mne_inverse.py | 0 examples/plot_estimate_covariance_matrix.py | 0 examples/plot_from_raw_to_epochs_to_evoked.py | 0 examples/plot_read_and_write_raw_data.py | 0 examples/plot_read_epochs.py | 0 examples/plot_read_evoked.py | 0 examples/plot_read_forward.py | 0 examples/plot_read_noise_covariance_matrix.py | 0 examples/plot_read_source_space.py | 0 examples/plot_read_stc.py | 0 examples/plot_roi_label_activations.py | 0 examples/plot_topography.py | 0 examples/plot_whiten_forward_solution.py | 0 examples/plot_whitened_evoked_data.py | 0 examples/read_bem_surfaces.py | 0 examples/read_events.py | 0 examples/read_inverse.py | 0 examples/stats/README.txt | 0 .../plot_cluster_1samp_test_time_frequency.py | 0 examples/stats/plot_cluster_stats_evoked.py | 0 .../stats/plot_cluster_stats_time_frequency.py | 0 examples/stats/plot_sensor_permutation_test.py | 0 examples/time_frequency/README.txt | 0 examples/time_frequency/plot_time_frequency.py | 0 mne/__init__.py | 0 mne/bem_surfaces.py | 0 mne/cov.py | 0 mne/datasets/__init__.py | 0 mne/datasets/sample/__init__.py | 0 mne/epochs.py | 0 mne/event.py | 0 mne/fiff/__init__.py | 0 mne/fiff/bunch.py | 0 mne/fiff/channels.py | 0 mne/fiff/compensator.py | 0 mne/fiff/constants.py | 0 mne/fiff/ctf.py | 0 mne/fiff/diff.py | 0 mne/fiff/evoked.py | 0 mne/fiff/matrix.py | 0 mne/fiff/meas_info.py | 0 mne/fiff/open.py | 0 mne/fiff/pick.py | 0 mne/fiff/proj.py | 0 mne/fiff/raw.py | 0 mne/fiff/tag.py | 0 mne/fiff/tests/__init__.py | 0 mne/fiff/tests/data/test-ave.fif | Bin mne/fiff/tests/data/test-cov.fif | Bin mne/fiff/tests/data/test-eve.fif | Bin mne/fiff/tests/data/test.ave | 0 mne/fiff/tests/data/test.cov | 0 mne/fiff/tests/data/test_raw-eve.fif | Bin mne/fiff/tests/data/test_raw.fif | Bin mne/fiff/tests/test_evoked.py | 0 mne/fiff/tests/test_raw.py | 0 mne/fiff/tree.py | 0 mne/fiff/write.py | 0 mne/forward.py | 0 mne/inverse.py | 0 mne/label.py | 0 mne/layouts/CTF-275.lout | 0 mne/layouts/Vectorview-all.lout | 0 mne/layouts/Vectorview-grad.lout | 0 mne/layouts/Vectorview-mag.lout | 0 mne/layouts/__init__.py | 0 mne/layouts/layout.py | 0 mne/layouts/magnesWH3600.lout | 0 mne/preprocessing.py | 0 mne/source_space.py | 0 mne/stats/__init__.py | 0 mne/stats/cluster_level.py | 0 mne/stats/parametric.py | 0 mne/stats/permutations.py | 0 mne/stats/tests/__init__.py | 0 mne/stats/tests/test_cluster_level.py | 0 mne/stats/tests/test_permutations.py | 0 mne/stc.py | 0 mne/tests/__init__.py | 0 mne/tests/test_bem_surfaces.py | 0 mne/tests/test_cov.py | 0 mne/tests/test_epochs.py | 0 mne/tests/test_event.py | 0 mne/tests/test_forward.py | 0 mne/tests/test_inverse.py | 0 mne/tests/test_label.py | 0 mne/tests/test_source_space.py | 0 mne/tests/test_stc.py | 0 mne/tests/test_viz.py | 0 mne/time_frequency/__init__.py | 0 mne/time_frequency/tests/test_tfr.py | 0 mne/time_frequency/tfr.py | 0 mne/transforms.py | 0 mne/viz.py | 0 setup.cfg | 0 setup.py | 0 230 files changed, 17 insertions(+), 17 deletions(-) diff --git a/.gitignore b/.gitignore old mode 100644 new mode 100755 diff --git a/AUTHORS.rst b/AUTHORS.rst old mode 100644 new mode 100755 diff --git a/LICENSE.txt b/LICENSE.txt old mode 100644 new mode 100755 diff --git a/MANIFEST.in b/MANIFEST.in old mode 100644 new mode 100755 diff --git a/Makefile b/Makefile old mode 100644 new mode 100755 diff --git a/README.rst b/README.rst old mode 100644 new mode 100755 diff --git a/doc/Makefile b/doc/Makefile old mode 100644 new mode 100755 diff --git a/doc/source/_static/default.css b/doc/source/_static/default.css old mode 100644 new mode 100755 diff --git a/doc/source/_static/favicon.ico b/doc/source/_static/favicon.ico old mode 100644 new mode 100755 diff --git a/doc/source/_static/logo.png b/doc/source/_static/logo.png old mode 100644 new mode 100755 diff --git a/doc/source/_static/navy.css b/doc/source/_static/navy.css old mode 100644 new mode 100755 diff --git a/doc/source/_templates/layout.html b/doc/source/_templates/layout.html old mode 100644 new mode 100755 diff --git a/doc/source/conf.py b/doc/source/conf.py old mode 100644 new mode 100755 diff --git a/doc/source/config_doc.rst b/doc/source/config_doc.rst old mode 100644 new mode 100755 diff --git a/doc/source/getting_started.rst b/doc/source/getting_started.rst old mode 100644 new mode 100755 diff --git a/doc/source/getting_started_at_martinos.rst b/doc/source/getting_started_at_martinos.rst old mode 100644 new mode 100755 diff --git a/doc/source/index.rst b/doc/source/index.rst old mode 100644 new mode 100755 diff --git a/doc/source/manual/AppA.rst b/doc/source/manual/AppA.rst old mode 100644 new mode 100755 index d6cfda2..4cc0611 --- a/doc/source/manual/AppA.rst +++ b/doc/source/manual/AppA.rst @@ -71,7 +71,7 @@ least with the same scanner. For easy co-registration, the images should have FOV, matrix, slice thickness, gap, and slice orientation as the MPRAGE data. For information on suitable pulse sequences, see reference\. Fischl *et al.* and J. Jovicich *et -al.*, 2006] in Section 13.3. At the Martinos +al.*, 2006] in :ref:`CEGEGDEI`. At the Martinos Center, use of the 1.5-T Avanto scanner (Bay 2) is recommended for best results. diff --git a/doc/source/manual/AppB.rst b/doc/source/manual/AppB.rst old mode 100644 new mode 100755 diff --git a/doc/source/manual/AppEULA.rst b/doc/source/manual/AppEULA.rst old mode 100644 new mode 100755 diff --git a/doc/source/manual/AppInstall.rst b/doc/source/manual/AppInstall.rst old mode 100644 new mode 100755 diff --git a/doc/source/manual/AppReleaseNotes.rst b/doc/source/manual/AppReleaseNotes.rst old mode 100644 new mode 100755 index 7f3b304..1021489 --- a/doc/source/manual/AppReleaseNotes.rst +++ b/doc/source/manual/AppReleaseNotes.rst @@ -19,7 +19,7 @@ The manual has been significantly expanded and reorganized. Chapter 7 describing been added. Chapter 12 contains instructions for analyzing the sample data set provided with the software. Useful background material is listed in Chapter 13. Almost all utility programs -are now covered in the manual. +are now covered in the manual.***do we need to remove all "chapter" references?*** General software changes ======================== @@ -127,7 +127,7 @@ There are several improvements in the raw data processor mne_browse_raw/mne_proc - It is now possible to load evoked-response data sets from files. Time scales of the evoked-response data and data averaged in mne_browse_raw can be now - set from the scales dialog. Section 12.9 in Chapter 12 has + set from the scales dialog. :ref:`CHDHBGGH` has been updated to employ mne_browse_raw in viewing the averages computed from the sample raw data set. @@ -140,7 +140,7 @@ There are several improvements in the raw data processor mne_browse_raw/mne_proc - Text format event files can now be loaded for easy inspection of rejected epochs, for example. -- Handling of derived channels has been added, see Sections 4.4.12 and 11.5. +- Handling of derived channels has been added, see Sections 4.4.12 and :ref:`CHDHJABJ`. - SSS information is now transferred to the covariance matrix output files. @@ -262,7 +262,7 @@ mne_show_fiff Replacement for the Neuromag utility show_fiff . This utility conforms to the standard command-line option conventions -in MNE software. For details, see Section 11.3. +in MNE software. For details, see :ref:`CHDHEDEF`. mne_make_cor_set ---------------- @@ -302,7 +302,7 @@ mne_make_derivations This new utility will take derivation data from a text file and convert it to fif format for use with mne_browse_raw , -see Section 11.5. +see :ref:`CHDHJABJ`. BEM mesh generation =================== @@ -588,7 +588,7 @@ The functionality is included in mne_process_raw . mne_rename_channels ------------------- -Added the ``--revert`` option, see Section 11.4.5. +Added the ``--revert`` option, see :ref:`CHDCFEAJ`. mne_setup_forward_model ----------------------- @@ -600,7 +600,7 @@ mne_simu -------- Added source waveform expressions and the ``--raw`` option, -see Section 11.13. +see :ref:`CHDECAFD`. mne_transform_points -------------------- @@ -648,7 +648,7 @@ mne_anonymize ------------- New utility to remove subject identifying information from -measurement files, see Section 11.4.7. +measurement files, see :ref:`CHDIJHIC`. mne_opengl_test --------------- @@ -675,7 +675,7 @@ mne_copy_processing_history --------------------------- This new utility copies the processing history block from -one data file to another, see Section 11.4.8. +one data file to another, see :ref:`CJACECAH`. Release notes for MNE software 2.7 ################################## @@ -765,7 +765,7 @@ Miscellaneous and bin/admin directories. - mne_anonymize now has the - --his option to remove the HIS ID of the subject, see Section 11.4.7, + --his option to remove the HIS ID of the subject, see :ref:`CHDIJHIC`. - mne_check_surface now has the --bem and --id options to check surfaces from a BEM fif file. @@ -787,10 +787,10 @@ Miscellaneous see Section 8.5. - Added the --blocks and --indent options to mne_show_fiff , - see Section 11.3. + see :ref:`CHDHEDEF`. - Added the --proj option as well as map types 5 and 6 to mne_sensitivity_map , - see Section 11.10. + see :ref:`CHDDCBGI`. - Fixed a bug in mne_inverse_operator which caused erroneous calculation of EEG-only source estimates if the @@ -824,7 +824,7 @@ mne_add_patch_info ================== Added the capability to compute distances between source -space vertices, see Section 11.7. +space vertices, see :ref:`BEHCBCGG`. Matlab toolbox ============== @@ -834,7 +834,7 @@ Matlab toolbox - mne_read_source_spaces.m now reads the inter-vertex distance information now optionally produced by mne_add_patch_info , - see Section 11.7. + see :ref:`BEHCBCGG`. Miscellaneous ============= diff --git a/doc/source/manual/analyze.rst b/doc/source/manual/analyze.rst old mode 100644 new mode 100755 diff --git a/doc/source/manual/browse.rst b/doc/source/manual/browse.rst old mode 100644 new mode 100755 diff --git a/doc/source/manual/convert.rst b/doc/source/manual/convert.rst old mode 100644 new mode 100755 diff --git a/doc/source/manual/cookbook.rst b/doc/source/manual/cookbook.rst old mode 100644 new mode 100755 index bc5e30a..8b7d598 --- a/doc/source/manual/cookbook.rst +++ b/doc/source/manual/cookbook.rst @@ -818,10 +818,10 @@ anatomy only, not on the MEG/EEG data to be analyzed. .. math:: 1 + 1 = 2 defined so that if the augmented location vectors in MRI -head and MRI coordinate systems are denoted by INLINE_EQUATION and INLINE_EQUATION, +head and MRI coordinate systems are denoted by INLINE_EQUATION and :math:`r_{head}[x_{MRI}\ y_{MRI}\ z_{MRI}\ 1]`, respectively, -.. math:: 1 + 1 = 2 +.. math:: r_{MRI} = T r_{head} .. note:: It is not possible to calculate an EEG forward solution with a single-layer BEM. diff --git a/doc/source/manual/forward.rst b/doc/source/manual/forward.rst old mode 100644 new mode 100755 diff --git a/doc/source/manual/intro.rst b/doc/source/manual/intro.rst old mode 100644 new mode 100755 diff --git a/doc/source/manual/list.rst b/doc/source/manual/list.rst old mode 100644 new mode 100755 diff --git a/doc/source/manual/matlab.rst b/doc/source/manual/matlab.rst old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne.rst b/doc/source/manual/mne.rst old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_analyze/MNE_preferences.png b/doc/source/manual/mne_analyze/MNE_preferences.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_analyze/adjust_alignment.png b/doc/source/manual/mne_analyze/adjust_alignment.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_analyze/adjust_lights.png b/doc/source/manual/mne_analyze/adjust_lights.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_analyze/adjust_menu.png b/doc/source/manual/mne_analyze/adjust_menu.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_analyze/cont_hpi_data.png b/doc/source/manual/mne_analyze/cont_hpi_data.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_analyze/dipole_list.png b/doc/source/manual/mne_analyze/dipole_list.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_analyze/dipole_parameters.png b/doc/source/manual/mne_analyze/dipole_parameters.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_analyze/dipoles_menu.png b/doc/source/manual/mne_analyze/dipoles_menu.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_analyze/epoch_selector.png b/doc/source/manual/mne_analyze/epoch_selector.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_analyze/field_mapping_pref.png b/doc/source/manual/mne_analyze/field_mapping_pref.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_analyze/file_menu.png b/doc/source/manual/mne_analyze/file_menu.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_analyze/hardcopy_controls.png b/doc/source/manual/mne_analyze/hardcopy_controls.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_analyze/help_menu.png b/doc/source/manual/mne_analyze/help_menu.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_analyze/image_dialog.png b/doc/source/manual/mne_analyze/image_dialog.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_analyze/label_list.png b/doc/source/manual/mne_analyze/label_list.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_analyze/labels_menu.png b/doc/source/manual/mne_analyze/labels_menu.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_analyze/main_window.png b/doc/source/manual/mne_analyze/main_window.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_analyze/movie_dialog.png b/doc/source/manual/mne_analyze/movie_dialog.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_analyze/mri_viewer.png b/doc/source/manual/mne_analyze/mri_viewer.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_analyze/open_dialog.png b/doc/source/manual/mne_analyze/open_dialog.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_analyze/overlay_management.png b/doc/source/manual/mne_analyze/overlay_management.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_analyze/patch_selection_dialog.png b/doc/source/manual/mne_analyze/patch_selection_dialog.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_analyze/save_label_timecourse.png b/doc/source/manual/mne_analyze/save_label_timecourse.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_analyze/scales_dialog.png b/doc/source/manual/mne_analyze/scales_dialog.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_analyze/surface_controls.png b/doc/source/manual/mne_analyze/surface_controls.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_analyze/surface_selection_dialog.png b/doc/source/manual/mne_analyze/surface_selection_dialog.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_analyze/timecourse_manager.png b/doc/source/manual/mne_analyze/timecourse_manager.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_analyze/view_menu.png b/doc/source/manual/mne_analyze/view_menu.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_analyze/viewer.png b/doc/source/manual/mne_analyze/viewer.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_analyze/viewer_options.png b/doc/source/manual/mne_analyze/viewer_options.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_analyze/visualize_hpi.png b/doc/source/manual/mne_analyze/visualize_hpi.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_analyze/windows_menu.png b/doc/source/manual/mne_analyze/windows_menu.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/adjust_menu.png b/doc/source/manual/mne_browse_raw/adjust_menu.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/adust_menu.png b/doc/source/manual/mne_browse_raw/adust_menu.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/average_pref.png b/doc/source/manual/mne_browse_raw/average_pref.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/channel_selection.png b/doc/source/manual/mne_browse_raw/channel_selection.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/file_menu.png b/doc/source/manual/mne_browse_raw/file_menu.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/filter_dialog.png b/doc/source/manual/mne_browse_raw/filter_dialog.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/help_menu.png b/doc/source/manual/mne_browse_raw/help_menu.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/main.png b/doc/source/manual/mne_browse_raw/main.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/manage_averages_dialog.png b/doc/source/manual/mne_browse_raw/manage_averages_dialog.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/new_selection.png b/doc/source/manual/mne_browse_raw/new_selection.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/new_ssp.png b/doc/source/manual/mne_browse_raw/new_ssp.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/open_dialog copy.png b/doc/source/manual/mne_browse_raw/open_dialog copy.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/open_dialog.png b/doc/source/manual/mne_browse_raw/open_dialog.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/process_menu.png b/doc/source/manual/mne_browse_raw/process_menu.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/process_menu2.png b/doc/source/manual/mne_browse_raw/process_menu2.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/scales_dialog.png b/doc/source/manual/mne_browse_raw/scales_dialog.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/scales_dialog2.png b/doc/source/manual/mne_browse_raw/scales_dialog2.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/toolbar.png b/doc/source/manual/mne_browse_raw/toolbar.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/windows_menu-0.png b/doc/source/manual/mne_browse_raw/windows_menu-0.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/windows_menu-1.png b/doc/source/manual/mne_browse_raw/windows_menu-1.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/windows_menu-10.png b/doc/source/manual/mne_browse_raw/windows_menu-10.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/windows_menu-11.png b/doc/source/manual/mne_browse_raw/windows_menu-11.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/windows_menu-12.png b/doc/source/manual/mne_browse_raw/windows_menu-12.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/windows_menu-13.png b/doc/source/manual/mne_browse_raw/windows_menu-13.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/windows_menu-14.png b/doc/source/manual/mne_browse_raw/windows_menu-14.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/windows_menu-15.png b/doc/source/manual/mne_browse_raw/windows_menu-15.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/windows_menu-16.png b/doc/source/manual/mne_browse_raw/windows_menu-16.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/windows_menu-17.png b/doc/source/manual/mne_browse_raw/windows_menu-17.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/windows_menu-2.png b/doc/source/manual/mne_browse_raw/windows_menu-2.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/windows_menu-3.png b/doc/source/manual/mne_browse_raw/windows_menu-3.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/windows_menu-4.png b/doc/source/manual/mne_browse_raw/windows_menu-4.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/windows_menu-5.png b/doc/source/manual/mne_browse_raw/windows_menu-5.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/windows_menu-6.png b/doc/source/manual/mne_browse_raw/windows_menu-6.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/windows_menu-7.png b/doc/source/manual/mne_browse_raw/windows_menu-7.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/windows_menu-8.png b/doc/source/manual/mne_browse_raw/windows_menu-8.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/windows_menu-9.png b/doc/source/manual/mne_browse_raw/windows_menu-9.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/mne_browse_raw/windows_menu.png b/doc/source/manual/mne_browse_raw/windows_menu.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/morph.rst b/doc/source/manual/morph.rst old mode 100644 new mode 100755 diff --git a/doc/source/manual/pics/Averaging-flowchart.png b/doc/source/manual/pics/Averaging-flowchart.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/pics/CoordinateSystems.png b/doc/source/manual/pics/CoordinateSystems.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/pics/Digitizer-example.png b/doc/source/manual/pics/Digitizer-example.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/pics/Flowchart.png b/doc/source/manual/pics/Flowchart.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/pics/HeadCS.png b/doc/source/manual/pics/HeadCS.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/pics/cover.png b/doc/source/manual/pics/cover.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/pics/flat.png b/doc/source/manual/pics/flat.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/pics/morphed.png b/doc/source/manual/pics/morphed.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/pics/neuromag.png b/doc/source/manual/pics/neuromag.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/pics/orig.png b/doc/source/manual/pics/orig.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/pics/proj-off-on.png b/doc/source/manual/pics/proj-off-on.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/pics/title_page.png b/doc/source/manual/pics/title_page.png old mode 100644 new mode 100755 diff --git a/doc/source/manual/reading.rst b/doc/source/manual/reading.rst old mode 100644 new mode 100755 diff --git a/doc/source/manual/sampledata.rst b/doc/source/manual/sampledata.rst old mode 100644 new mode 100755 diff --git a/doc/source/manual/utilities.rst b/doc/source/manual/utilities.rst old mode 100644 new mode 100755 diff --git a/doc/source/mne-python.rst b/doc/source/mne-python.rst old mode 100644 new mode 100755 diff --git a/doc/source/tutorial.rst b/doc/source/tutorial.rst old mode 100644 new mode 100755 diff --git a/doc/sphinxext/README.txt b/doc/sphinxext/README.txt old mode 100644 new mode 100755 diff --git a/doc/sphinxext/docscrape.py b/doc/sphinxext/docscrape.py old mode 100644 new mode 100755 diff --git a/doc/sphinxext/docscrape_sphinx.py b/doc/sphinxext/docscrape_sphinx.py old mode 100644 new mode 100755 diff --git a/doc/sphinxext/gen_rst.py b/doc/sphinxext/gen_rst.py old mode 100644 new mode 100755 diff --git a/doc/sphinxext/ipython_console_highlighting.py b/doc/sphinxext/ipython_console_highlighting.py old mode 100644 new mode 100755 diff --git a/doc/sphinxext/numpy_ext/__init__.py b/doc/sphinxext/numpy_ext/__init__.py old mode 100644 new mode 100755 diff --git a/doc/sphinxext/numpy_ext/docscrape.py b/doc/sphinxext/numpy_ext/docscrape.py old mode 100644 new mode 100755 diff --git a/doc/sphinxext/numpy_ext/docscrape_sphinx.py b/doc/sphinxext/numpy_ext/docscrape_sphinx.py old mode 100644 new mode 100755 diff --git a/doc/sphinxext/numpy_ext/numpydoc.py b/doc/sphinxext/numpy_ext/numpydoc.py old mode 100644 new mode 100755 diff --git a/doc/sphinxext/numpy_ext_old/__init__.py b/doc/sphinxext/numpy_ext_old/__init__.py old mode 100644 new mode 100755 diff --git a/doc/sphinxext/numpy_ext_old/docscrape.py b/doc/sphinxext/numpy_ext_old/docscrape.py old mode 100644 new mode 100755 diff --git a/doc/sphinxext/numpy_ext_old/docscrape_sphinx.py b/doc/sphinxext/numpy_ext_old/docscrape_sphinx.py old mode 100644 new mode 100755 diff --git a/doc/sphinxext/numpy_ext_old/numpydoc.py b/doc/sphinxext/numpy_ext_old/numpydoc.py old mode 100644 new mode 100755 diff --git a/doc/sphinxext/only_directives.py b/doc/sphinxext/only_directives.py old mode 100644 new mode 100755 diff --git a/examples/README.txt b/examples/README.txt old mode 100644 new mode 100755 diff --git a/examples/extract_events_from_raw.py b/examples/extract_events_from_raw.py old mode 100644 new mode 100755 diff --git a/examples/plot_compute_mne_inverse.py b/examples/plot_compute_mne_inverse.py old mode 100644 new mode 100755 diff --git a/examples/plot_estimate_covariance_matrix.py b/examples/plot_estimate_covariance_matrix.py old mode 100644 new mode 100755 diff --git a/examples/plot_from_raw_to_epochs_to_evoked.py b/examples/plot_from_raw_to_epochs_to_evoked.py old mode 100644 new mode 100755 diff --git a/examples/plot_read_and_write_raw_data.py b/examples/plot_read_and_write_raw_data.py old mode 100644 new mode 100755 diff --git a/examples/plot_read_epochs.py b/examples/plot_read_epochs.py old mode 100644 new mode 100755 diff --git a/examples/plot_read_evoked.py b/examples/plot_read_evoked.py old mode 100644 new mode 100755 diff --git a/examples/plot_read_forward.py b/examples/plot_read_forward.py old mode 100644 new mode 100755 diff --git a/examples/plot_read_noise_covariance_matrix.py b/examples/plot_read_noise_covariance_matrix.py old mode 100644 new mode 100755 diff --git a/examples/plot_read_source_space.py b/examples/plot_read_source_space.py old mode 100644 new mode 100755 diff --git a/examples/plot_read_stc.py b/examples/plot_read_stc.py old mode 100644 new mode 100755 diff --git a/examples/plot_roi_label_activations.py b/examples/plot_roi_label_activations.py old mode 100644 new mode 100755 diff --git a/examples/plot_topography.py b/examples/plot_topography.py old mode 100644 new mode 100755 diff --git a/examples/plot_whiten_forward_solution.py b/examples/plot_whiten_forward_solution.py old mode 100644 new mode 100755 diff --git a/examples/plot_whitened_evoked_data.py b/examples/plot_whitened_evoked_data.py old mode 100644 new mode 100755 diff --git a/examples/read_bem_surfaces.py b/examples/read_bem_surfaces.py old mode 100644 new mode 100755 diff --git a/examples/read_events.py b/examples/read_events.py old mode 100644 new mode 100755 diff --git a/examples/read_inverse.py b/examples/read_inverse.py old mode 100644 new mode 100755 diff --git a/examples/stats/README.txt b/examples/stats/README.txt old mode 100644 new mode 100755 diff --git a/examples/stats/plot_cluster_1samp_test_time_frequency.py b/examples/stats/plot_cluster_1samp_test_time_frequency.py old mode 100644 new mode 100755 diff --git a/examples/stats/plot_cluster_stats_evoked.py b/examples/stats/plot_cluster_stats_evoked.py old mode 100644 new mode 100755 diff --git a/examples/stats/plot_cluster_stats_time_frequency.py b/examples/stats/plot_cluster_stats_time_frequency.py old mode 100644 new mode 100755 diff --git a/examples/stats/plot_sensor_permutation_test.py b/examples/stats/plot_sensor_permutation_test.py old mode 100644 new mode 100755 diff --git a/examples/time_frequency/README.txt b/examples/time_frequency/README.txt old mode 100644 new mode 100755 diff --git a/examples/time_frequency/plot_time_frequency.py b/examples/time_frequency/plot_time_frequency.py old mode 100644 new mode 100755 diff --git a/mne/__init__.py b/mne/__init__.py old mode 100644 new mode 100755 diff --git a/mne/bem_surfaces.py b/mne/bem_surfaces.py old mode 100644 new mode 100755 diff --git a/mne/cov.py b/mne/cov.py old mode 100644 new mode 100755 diff --git a/mne/datasets/__init__.py b/mne/datasets/__init__.py old mode 100644 new mode 100755 diff --git a/mne/datasets/sample/__init__.py b/mne/datasets/sample/__init__.py old mode 100644 new mode 100755 diff --git a/mne/epochs.py b/mne/epochs.py old mode 100644 new mode 100755 diff --git a/mne/event.py b/mne/event.py old mode 100644 new mode 100755 diff --git a/mne/fiff/__init__.py b/mne/fiff/__init__.py old mode 100644 new mode 100755 diff --git a/mne/fiff/bunch.py b/mne/fiff/bunch.py old mode 100644 new mode 100755 diff --git a/mne/fiff/channels.py b/mne/fiff/channels.py old mode 100644 new mode 100755 diff --git a/mne/fiff/compensator.py b/mne/fiff/compensator.py old mode 100644 new mode 100755 diff --git a/mne/fiff/constants.py b/mne/fiff/constants.py old mode 100644 new mode 100755 diff --git a/mne/fiff/ctf.py b/mne/fiff/ctf.py old mode 100644 new mode 100755 diff --git a/mne/fiff/diff.py b/mne/fiff/diff.py old mode 100644 new mode 100755 diff --git a/mne/fiff/evoked.py b/mne/fiff/evoked.py old mode 100644 new mode 100755 diff --git a/mne/fiff/matrix.py b/mne/fiff/matrix.py old mode 100644 new mode 100755 diff --git a/mne/fiff/meas_info.py b/mne/fiff/meas_info.py old mode 100644 new mode 100755 diff --git a/mne/fiff/open.py b/mne/fiff/open.py old mode 100644 new mode 100755 diff --git a/mne/fiff/pick.py b/mne/fiff/pick.py old mode 100644 new mode 100755 diff --git a/mne/fiff/proj.py b/mne/fiff/proj.py old mode 100644 new mode 100755 diff --git a/mne/fiff/raw.py b/mne/fiff/raw.py old mode 100644 new mode 100755 diff --git a/mne/fiff/tag.py b/mne/fiff/tag.py old mode 100644 new mode 100755 diff --git a/mne/fiff/tests/__init__.py b/mne/fiff/tests/__init__.py old mode 100644 new mode 100755 diff --git a/mne/fiff/tests/data/test-ave.fif b/mne/fiff/tests/data/test-ave.fif old mode 100644 new mode 100755 diff --git a/mne/fiff/tests/data/test-cov.fif b/mne/fiff/tests/data/test-cov.fif old mode 100644 new mode 100755 diff --git a/mne/fiff/tests/data/test-eve.fif b/mne/fiff/tests/data/test-eve.fif old mode 100644 new mode 100755 diff --git a/mne/fiff/tests/data/test.ave b/mne/fiff/tests/data/test.ave old mode 100644 new mode 100755 diff --git a/mne/fiff/tests/data/test.cov b/mne/fiff/tests/data/test.cov old mode 100644 new mode 100755 diff --git a/mne/fiff/tests/data/test_raw-eve.fif b/mne/fiff/tests/data/test_raw-eve.fif old mode 100644 new mode 100755 diff --git a/mne/fiff/tests/data/test_raw.fif b/mne/fiff/tests/data/test_raw.fif old mode 100644 new mode 100755 diff --git a/mne/fiff/tests/test_evoked.py b/mne/fiff/tests/test_evoked.py old mode 100644 new mode 100755 diff --git a/mne/fiff/tests/test_raw.py b/mne/fiff/tests/test_raw.py old mode 100644 new mode 100755 diff --git a/mne/fiff/tree.py b/mne/fiff/tree.py old mode 100644 new mode 100755 diff --git a/mne/fiff/write.py b/mne/fiff/write.py old mode 100644 new mode 100755 diff --git a/mne/forward.py b/mne/forward.py old mode 100644 new mode 100755 diff --git a/mne/inverse.py b/mne/inverse.py old mode 100644 new mode 100755 diff --git a/mne/label.py b/mne/label.py old mode 100644 new mode 100755 diff --git a/mne/layouts/CTF-275.lout b/mne/layouts/CTF-275.lout old mode 100644 new mode 100755 diff --git a/mne/layouts/Vectorview-all.lout b/mne/layouts/Vectorview-all.lout old mode 100644 new mode 100755 diff --git a/mne/layouts/Vectorview-grad.lout b/mne/layouts/Vectorview-grad.lout old mode 100644 new mode 100755 diff --git a/mne/layouts/Vectorview-mag.lout b/mne/layouts/Vectorview-mag.lout old mode 100644 new mode 100755 diff --git a/mne/layouts/__init__.py b/mne/layouts/__init__.py old mode 100644 new mode 100755 diff --git a/mne/layouts/layout.py b/mne/layouts/layout.py old mode 100644 new mode 100755 diff --git a/mne/layouts/magnesWH3600.lout b/mne/layouts/magnesWH3600.lout old mode 100644 new mode 100755 diff --git a/mne/preprocessing.py b/mne/preprocessing.py old mode 100644 new mode 100755 diff --git a/mne/source_space.py b/mne/source_space.py old mode 100644 new mode 100755 diff --git a/mne/stats/__init__.py b/mne/stats/__init__.py old mode 100644 new mode 100755 diff --git a/mne/stats/cluster_level.py b/mne/stats/cluster_level.py old mode 100644 new mode 100755 diff --git a/mne/stats/parametric.py b/mne/stats/parametric.py old mode 100644 new mode 100755 diff --git a/mne/stats/permutations.py b/mne/stats/permutations.py old mode 100644 new mode 100755 diff --git a/mne/stats/tests/__init__.py b/mne/stats/tests/__init__.py old mode 100644 new mode 100755 diff --git a/mne/stats/tests/test_cluster_level.py b/mne/stats/tests/test_cluster_level.py old mode 100644 new mode 100755 diff --git a/mne/stats/tests/test_permutations.py b/mne/stats/tests/test_permutations.py old mode 100644 new mode 100755 diff --git a/mne/stc.py b/mne/stc.py old mode 100644 new mode 100755 diff --git a/mne/tests/__init__.py b/mne/tests/__init__.py old mode 100644 new mode 100755 diff --git a/mne/tests/test_bem_surfaces.py b/mne/tests/test_bem_surfaces.py old mode 100644 new mode 100755 diff --git a/mne/tests/test_cov.py b/mne/tests/test_cov.py old mode 100644 new mode 100755 diff --git a/mne/tests/test_epochs.py b/mne/tests/test_epochs.py old mode 100644 new mode 100755 diff --git a/mne/tests/test_event.py b/mne/tests/test_event.py old mode 100644 new mode 100755 diff --git a/mne/tests/test_forward.py b/mne/tests/test_forward.py old mode 100644 new mode 100755 diff --git a/mne/tests/test_inverse.py b/mne/tests/test_inverse.py old mode 100644 new mode 100755 diff --git a/mne/tests/test_label.py b/mne/tests/test_label.py old mode 100644 new mode 100755 diff --git a/mne/tests/test_source_space.py b/mne/tests/test_source_space.py old mode 100644 new mode 100755 diff --git a/mne/tests/test_stc.py b/mne/tests/test_stc.py old mode 100644 new mode 100755 diff --git a/mne/tests/test_viz.py b/mne/tests/test_viz.py old mode 100644 new mode 100755 diff --git a/mne/time_frequency/__init__.py b/mne/time_frequency/__init__.py old mode 100644 new mode 100755 diff --git a/mne/time_frequency/tests/test_tfr.py b/mne/time_frequency/tests/test_tfr.py old mode 100644 new mode 100755 diff --git a/mne/time_frequency/tfr.py b/mne/time_frequency/tfr.py old mode 100644 new mode 100755 diff --git a/mne/transforms.py b/mne/transforms.py old mode 100644 new mode 100755 diff --git a/mne/viz.py b/mne/viz.py old mode 100644 new mode 100755 diff --git a/setup.cfg b/setup.cfg old mode 100644 new mode 100755 diff --git a/setup.py b/setup.py old mode 100644 new mode 100755 -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-mne.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
